Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq225 165 1e-35 seq749 102 1e-16 >seq225 Length=233467 Score = 165 bits (182), Expect = 1e-35 Identities = 478/730 (65%), Gaps = 19/730 (3%) Strand=Plus/Minus Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 ||| || |||||||||| ||| | ||||| | | |||||||||||| | || | | Sbjct 26879 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 26820 Query 18049 AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTAT 18108 || | ||| ||| | | ||||| | ||| || | ||||| || ||||| | | Sbjct 26819 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 26760 Query 18109 TA--CCCTAGATT--TTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAA 18164 | | || ||| |||| ||| | |||| || || || || | |||| || | Sbjct 26759 AATTCGCTC-ATTACTTGG---TTTTTGTATTAAATG-TTGGAACATCA--AACATGCGA 26707 Query 18165 AATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCA 18224 | ||| || | || ||||||| || |||| ||| || ||| || || || |||| Sbjct 26706 AGTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCA 26647 Query 18225 TTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCT 18284 ||| ||| | ||| || ||||| || ||||| || ||||| | | ||||| ||||| | Sbjct 26646 TTAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTT 26587 Query 18285 CAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATT 18344 ||||| || || || |||| | |||| |||| || || ||||| Sbjct 26586 CAACGGCAGCAAATGCAATTACACGTTCACCAAAGTTGGCCGACTTCGAGGAAATCCAAG 26527 Query 18345 TTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAA 18403 | ||||| ||| |||| || || || ||||||||||||| || || Sbjct 26526 CAAGCGCCCAATCTGCCTTACGCTTTACGGCA-GGCATTGTCTCTATAGCATTGAATAAG 26468 Query 18404 TCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAA 18463 | || ||| ||| || || || ||||| || || ||||| | ||||||||||||| Sbjct 26467 TAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 26408 Query 18464 TGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATC 18523 || | | ||||| || || ||||| | ||| || | | ||||| | ||| | Sbjct 26407 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 26348 Query 18524 TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAAT 18583 || | || | ||| || | ||| ||||| || ||||| |||| | |||||||| Sbjct 26347 TCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 26288 Query 18584 GCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATA 18643 || || || | | ||| |||||| ||||||||| | ||| ||| ||||| ||| Sbjct 26287 GCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTTAGACGTGCCCAATCATCCATA 26228 Query 18644 TCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATT 18703 ||||| || ||||| ||||| | |||||| || |||| ||| ||||| || | Sbjct 26227 TCTTTAGAAAGATCTACTTCCCCTACTGTCCAGAACGATGCTTCTGCCTG------CAAT 26174 Query 18704 TTATAAATAT 18713 ||||||||| Sbjct 26173 ATATAAATAT 26164 >seq749 Length=113903 Score = 102 bits (112), Expect = 1e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||| ||||| || ||||| ||||| | || || ||| ||| Sbjct 710 ATGCAAATCTTCGTTAAAACTTTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCC 651 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| || || || || || || |||||||| ||| Sbjct 650 GATACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAGGGTATTCCTCCAGATCAA 591 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||||||||||| | ||||| | || || || ||||| | Sbjct 590 CAACGTTTAATCTTCGCCGGTAAGCAATTGGAAGACGGACGTACCTTGTCCGATTACA-- 533 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| || | || ||||| || || || Sbjct 532 ACATCCAAAAGGAATCTACTCTTCACTTGGTATT 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731579617136000