Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq225 212 1e-49
seq2732 167 5e-36
seq749 141 2e-28
seq609 141 2e-28
>seq225
Length=233467
Score = 212 bits (234), Expect = 1e-49
Identities = 468/702 (67%), Gaps = 13/702 (2%)
Strand=Plus/Minus
Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714
||| || |||||||| | ||| | ||||||| || ||||||||||| | ||| || |
Sbjct 26879 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 26820
Query 49715 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc---at 49771
|| || || ||| | ||||| | || |||| ||||||| |||||| |
Sbjct 26819 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 26760
Query 49772 aattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCAAA 49831
|||| | ||| ||| | ||| |||| ||| | | | | || |||||||| ||
Sbjct 26759 AATTCGCTCATTACTTGGTT-TTTGTATTAAATGTT----GGA-ACATCAAACATGCGAA 26706
Query 49832 ATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 49891
||| ||| | ||||| || | || || | |||||| ||| || || ||||||||
Sbjct 26705 GTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCAT 26646
Query 49892 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 49951
||| || | || |||||||| || || || |||||||| | | ||||| ||||| ||
Sbjct 26645 TAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTC 26586
Query 49952 GACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA--ATATCCAA 50009
|| |||||||| |||| | | | ||||| || | | || | | ||||||
Sbjct 26585 AACGGCAGCAAATGCAATTACACGTTCACCAAAG-TTGGCCGA-CTTCGAGGAAATCCAA 26528
Query 50010 TTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 50069
| ||||||||||| || || | | ||| || | |||||||| || |||||
Sbjct 26527 GCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAG 26468
Query 50070 TCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGAA 50129
| ||| ||| | ||||||| |||||||||||||
Sbjct 26467 TAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 26408
Query 50130 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAACT 50189
|| ||| ||||| || ||||||||| ||| || | ||| |||| || |||
Sbjct 26407 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 26348
Query 50190 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 50249
|| |||| |||||||||| ||| ||| ||||||||||||||||| ||||| ||
Sbjct 26347 TCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 26288
Query 50250 GCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 50309
||||| |||| | |||||||||| ||||||||| ||| | | ||||| || | |
Sbjct 26287 GCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTTAGACGTGCCCAATCATCCATA 26228
Query 50310 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351
|| || || | ||||||||| ||| |||||| || ||||||
Sbjct 26227 TCTTTAGAAAGATCTACTTCCCCTACTGTCCAGAACGATGCT 26186
>seq2732
Length=47336
Score = 167 bits (184), Expect = 5e-36
Identities = 176/230 (77%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
|||||||||||||| | ||||||||| || |||| |||||| |||||||| ||||
Sbjct 1606 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1665
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
||||| || |||| |||||||| || || ||||| |||| | |||||||||||| ||
Sbjct 1666 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCGGA 1725
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGAATCTGACGATTCTA 192487
|||||||| |||||||| ||||| || |||| ||| |||| ||| || | || |
Sbjct 1726 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACAT--GTTCAATAGTATCCGAAGGCTCAA 1783
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
| || ||||| ||||| ||||| || | ||||| | ||||| ||||||
Sbjct 1784 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCATT 1833
>seq749
Length=113903
Score = 141 bits (156), Expect = 2e-28
Identities = 171/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | ||||| | || ||||| | |||| ||| || ||| || |||||
Sbjct 937 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 996
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || ||| | || |||| ||||||||| ||||||||||| | |||||||| ||
Sbjct 997 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 1056
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||||||||| ||||| || ||| ||| ||||| |||| ||| || | |||
Sbjct 1057 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 1116
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || ||||| ||||| || ||||| || || || | || || ||||||||
Sbjct 1117 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 1169
Score = 129 bits (142), Expect = 1e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|||||||| | ||||| ||||| || || | ||||| |||||| ||| || |||||
Sbjct 25 ATACCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCG 84
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| || || ||| | || ||||||||||| || || ||||| || | || ||||| ||
Sbjct 85 GACAAGGTACGTCCGTCCTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGG 144
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| |||||||| || ||| || || || || | |||||| | |||
Sbjct 145 GGAATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGTTCA 204
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || | ||||||||||| ||||| | || || | || || ||||||
Sbjct 205 ACNTCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCATT 255
>seq609
Length=128410
Score = 141 bits (156), Expect = 2e-28
Identities = 176/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358
||| ||| |||||||| | |||||| | || ||||| | || | ||| || ||| |
Sbjct 92981 GTTCAATGATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGT 92922
Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418
| || || || || || || |||| ||||||||||| || || ||||| || | |||||
Sbjct 92921 TGTAGTCGGACAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTT 92862
Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478
|||| || || || || ||||| ||||| |||||| ||| ||||| || | || |
Sbjct 92861 GATCTGGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAG 92802
Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538
| | || || |||| || ||||| ||||||||||| ||||| | || ||||||||||
Sbjct 92801 AAGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTT 92742
Query 192539 T 192539
|
Sbjct 92741 T 92741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984076867746000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |