Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq225 165 1e-35 seq2732 158 2e-33 seq749 136 7e-27 seq609 120 5e-22 >seq225 Length=233467 Score = 165 bits (182), Expect = 1e-35 Identities = 454/702 (65%), Gaps = 13/702 (2%) Strand=Plus/Minus Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016 ||| ||||||||||| | ||| | |||||| || ||||||||||| | ||| || | Sbjct 26879 ATCAGCCACAAATTCGATATAATCGGACATTAGTTTGCAATTCATACCGATTAAATTCAC 26820 Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc---at 39073 || || || ||| | ||||| | || |||| ||||||| |||||| | Sbjct 26819 CGGCAAAGCGTCAGTTAAGAATTCCTGCTCAATTTTAACAGCTTCAGAAATTATTTCAAC 26760 Query 39074 aattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAA 39133 |||| | ||| ||| | ||| |||| ||| | | | | || |||||||| || Sbjct 26759 AATTCGCTCATTACTTGGTT-TTTGTATTAAATGT---TGGAACATC--AAACATGCGAA 26706 Query 39134 ATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 39193 || ||| | || || || | || || | |||||| ||| || || |||||||| Sbjct 26705 GTCACAATGAAGTCCCTCATCTCGTGAAATTAGTTCATTGGAAAATGTCAAGCCTGGCAT 26646 Query 39194 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 39253 ||| || | || |||||||| || || || |||||||| | | ||||| ||||| || Sbjct 26645 TAAACCACGTTTCTTAAGCCAGAAGATCGAAGCAAAACTGCCACTGAAGAAAATACCTTC 26586 Query 39254 CACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA--AAATCCAA 39311 || |||||||| |||| | | | ||||| || | | || | |||||||| Sbjct 26585 AACGGCAGCAAATGCAATTACACGTTCACCAAAG-TTGGCCGA-CTTCGAGGAAATCCAA 26528 Query 39312 TTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 39371 | ||||||||||| || || | | ||| || | |||||||| || ||||| Sbjct 26527 GCAAGCGCCCAATCTGCCTTACGCTTTACGGCAGGCATTGTCTCTATAGCATTGAATAAG 26468 Query 39372 TCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAA 39431 | || ||||||||||||| Sbjct 26467 TAATTCCTTTGTTTCGAGTCCTTAATATATGTATCAATTAATATGCTATACATTTCAGAA 26408 Query 39432 TGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAACT 39491 || ||| ||||| || ||||||||| ||| || | ||| |||| || ||| Sbjct 26407 TGCACATTCTCCATCGCAATTTGAAATCCATAGAAGCAACGTGCCTCTGTCACTTGGACT 26348 Query 39492 TCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAAT 39551 || |||| |||||||||| ||| ||| ||||||||||||||||| ||||| || Sbjct 26347 TCCTGGCAGAAGCGTTCAACTACATTTTCATTCACAATACCATCAGATGCGGCGAAAAAG 26288 Query 39552 GCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGA 39611 ||||| || | | |||||||||| ||||||||| ||| | | ||||| || | | Sbjct 26287 GCTAACACGTGTGAAATAAAATGTCGTTCATTATCAGTTAGACGTGCCCAATCATCCATA 26228 Query 39612 TCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 || || || | ||||||||| ||| |||||| || |||||| Sbjct 26227 TCTTTAGAAAGATCTACTTCCCCTACTGTCCAGAACGATGCT 26186 >seq2732 Length=47336 Score = 158 bits (174), Expect = 2e-33 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||||||| || | ||||||||| || |||| |||||| ||||||||| || | Sbjct 1606 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1665 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || |||||||| || || |||||||||| | |||||| ||||| || Sbjct 1666 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCGGA 1725 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT--ATAGTATCTGACGATTCTA 172020 |||||||| |||||||| ||||| || |||| ||| |||||||| || | || | Sbjct 1726 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACAT--GTTCAATAGTATCCGAAGGCTCAA 1783 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtt 172070 | || ||||| ||||| ||||| || | ||||| | |||||| |||||| Sbjct 1784 CCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCATT 1833 >seq749 Length=113903 Score = 136 bits (150), Expect = 7e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | |||| ||| || || || ||||| Sbjct 937 ATGCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 996 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| |||| ||||||||| ||||| ||||| | ||||| || || Sbjct 997 GACAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 1056 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || ||| ||| ||||| |||||||| || | ||| Sbjct 1057 GGGATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 1116 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072 || || ||||| ||||| || ||||| || || || | ||| || |||||||| Sbjct 1117 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 1169 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || ||||| || || | ||||| |||||| || || ||||| Sbjct 25 ATACCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCG 84 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| ||||||||||| || || || || || | || || || || Sbjct 85 GACAAGGTACGTCCGTCCTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGG 144 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || ||| || || || || |||||||| | ||| Sbjct 145 GGAATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGTTCA 204 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtt 172070 || || | ||||||||||| ||||| | || || | ||| || |||||| Sbjct 205 ACNTCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCATT 255 >seq609 Length=128410 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | || ||||| | || | ||| || || || || Sbjct 92976 ATGATACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAG 92917 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || ||||||||||| || || || || || | |||||| || Sbjct 92916 TCGGACAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCT 92857 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || || ||||| ||||| |||||| ||| ||||| || || || || | Sbjct 92856 GGGGGGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGC 92797 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072 || || |||| || ||||| ||||||||||| ||||| | ||| ||||||||||| Sbjct 92796 TCGACCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTT 92741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904774398168000