Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2899 154 4e-32 seq291 122 3e-22 seq2023 118 3e-21 seq312 118 3e-21 seq324 91.5 4e-13 seq969 87.8 5e-12 >seq2899 Length=45015 Score = 154 bits (170), Expect = 4e-32 Identities = 210/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||||||||| ||||| |||||||| ||| | || || || |||||||| || || Sbjct 22344 TTGATTAAACGCCGCTGTATATAACCCGTTTCTGCAGTCTTCACGGCTGTATCGATAAGT 22403 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||| || ||||| ||||||||| | | ||| ||| ||| ||| | | | Sbjct 22404 CCTTCACGTCCGCCCATTGCATGGAAGTAGAACTCACTTGGTGTTAGGCCCGCTAGGTAT 22463 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 || |||| ||||| || || ||||| ||| || ||| |||| |||||||||||| Sbjct 22464 GAATTCTCGACGAAGCCGCGTGCCTCTGGCCCATAATCGTCCTTGATAAAGTGTGGCATT 22523 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC 302823 |||| || | | ||||| || ||||| || || || ||||||||||| || | ||| Sbjct 22524 GTCCGTTTACGAAAACCGTAAGGTATACGTTTACCTTCGACGTTCTGCTGCCCAACGCAG 22583 Query 302824 GAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||||| || || || || | || | |||||||| ||||| ||||||| Sbjct 22584 GCAATCACTTGTGATATGTTAATATTAGAACCCTTGGAACCAGCGATTACCAT 22636 Score = 87.8 bits (96), Expect = 5e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 233263 AAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACC 233322 |||| || ||| || |||| ||| ||||||||||||||| ||||| | ||| ||||| Sbjct 39725 AAATTGTGCAGCTCCATGAGATATCTGACAATCACGTTCCATCTCACCGAAACGTAGACC 39784 Query 233323 ACCATCATTTGACCTACCCTGGACTGTTTGACG-AGTTAAAACAGTTCTTGGACCCTGAG 233381 ||||||| || |||||||| | | ||| || | | ||| | || | ||||| | | Sbjct 39785 ACCATCACGTGCCCTACCCTCCATAGGTTGGCGCACTAAAATCTGTAC-GGGACCACGTG 39843 Query 233382 CACGATAATTAATTTTATCTTTAACCATATGCTTCAG 233418 ||||| | | |||||| || | ||||| ||||| || Sbjct 39844 CACGAGAGTGAATTTTGTCATCCACCATGTGCTTGAG 39880 >seq291 Length=196152 Score = 122 bits (134), Expect = 3e-22 Identities = 574/896 (64%), Gaps = 13/896 (1%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 ||||| ||||| || || | ||| || ||| || ||||| | ||||| || ||| Sbjct 77090 TATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCAACATTCTGTTGATTA 77031 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || | ||||||||||| || || | |||||||| || || ||||||| || | Sbjct 77030 CTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCGGTCTCCACTTGCGAT 76971 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || | ||| | | ||| || | || || |||| ||| ||| | |||||| Sbjct 76970 TCAATAATGCTAAACCAAAGACTTTGTGCTTTTATTTTCTTATTGGCACGTCCTTCCTGT 76911 Query 155811 TCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCAC 155870 |||||||||| ||| | | || | | || ||||| | ||| | || || ||| Sbjct 76910 TCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATACTTCATGTAAACCGGGACAC 76851 Query 155871 TTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCA 155930 || | || || | |||||||| || || | |||||| | |||||||| |||| Sbjct 76850 TTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTCTACACGTTTCATAAATAGATCA 76791 Query 155931 CTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTGACTCCTCATCGCC-GTGATTCT 155988 ||| | |||||||| | || || || | || ||| || | ||| ||| || | Sbjct 76790 GGTATCCATAAGGCATAGAACAAATCTCTGGCGCGATG-CTCTTCTTTGCCAGTG-TTTT 76733 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA-A 156047 | | || || ||||| |||||||| ||| ||| ||||| || || ||||| Sbjct 76732 TTTTCAATTCCAAAAATTCGAAAATATCAGCATGCCATGGTTCCAGGTAGATGGCAAAGG 76673 Query 156048 CTACCATTCCTCT--TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 | | || | | |||||| ||||| ||||| || || | |||||||| || | | Sbjct 76672 CGCCTGGTCGTTTACCGCCACCTTGATCCACATAGCGTGCTATATTATTGAACACTCGCA 76613 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGC-GAACCAGATGAG 156164 |||||| | | |||||| || |||| ||| || || ||| ||| | || || Sbjct 76612 ACATAGGCACCAAACCATTTGATGTGCTATTTGTACCCACAAT-TGCAGTGCCTTTTGCA 76554 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 || | ||| | | || |||||||| || | |||| ||||| || |||| Sbjct 76553 CGTATGCAATGTACGTTCAGACCAATACCGCCAGCAGATTTGGAAATCAATGCACATTGA 76494 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284 | | ||| |||||||||| ||||| ||||| || |||| | |||||| |||| || Sbjct 76493 TGTGCAGATGTGAAAATACCATCAATGGAATCGTCCACCATGGTCAGTAGAAAGCATGAT 76434 Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344 ||||| || | || |||| ||| || || || | ||||| ||||||| Sbjct 76433 GACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAAGCGTTGGAGAAGCATGTGTAAAATAA 76374 Query 156345 TTATTAGACATATAATCGTATGTCTCCTTAATCTTC-TCAAGATTAGACCCGTGAATACA 156403 | || | | | ||| || || | || | || | | || || |||| Sbjct 76373 CGTTCGGAAAGCAAGTTGTAAGTTTCGAT-TGCTGCATCGATGTCTTCGCCATGTATACC 76315 Query 156404 GATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCC-ATCAATTCGCA 156462 ||| | || | ||| |||||||||| || ||||| ||||| || |||||| | Sbjct 76314 GATGGCAACACGCATTAACATATGCTGTGGTCGCTCAACAATTTTGCCGTTCAATT-TTA 76256 Query 156463 GAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGG 156518 | | || | ||||| || |||||||| || ||||||| | | |||||| ||| Sbjct 76255 GCAAATAGGAACGTTCAAGCGTTTTAAAACCAAAATAATTATAACCAAAATCGCGG 76200 >seq2023 Length=58511 Score = 118 bits (130), Expect = 3e-21 Identities = 227/333 (68%), Gaps = 4/333 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||| ||||| || | | ||| || | || | ||| || || | | Sbjct 42080 CCAACCGCATCAATTTCATCAATAAACAAAATACATGGTGCATGCTTTCTAGCCATGGAA 42021 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | |||| ||||| || | || | ||||||| ||||||| | ||| || ||| || Sbjct 42020 AACATATCTCGAACACGTGACGGACCTACACCAACAAACATTTCCAAAAACTCGGAACCG 41961 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||||| || || | ||||||||||| || || |||| | || | | ||| || Sbjct 41960 GATACGCTTATAAAAGGAACATTTGCTTCACCAGCGGTTGCCTTTGCTAATAATGTTTTT 41901 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 ||||| |||||||| || | | | | || ||||| | |||||| || | || Sbjct 41900 CCTGTACCAGGTGGACCTGTGAGCATAGCACCTTTTGGAATTTTTGCGCCGAGATCAATA 41841 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 |||| | ||| | ||||| || | |||| |||| || ||| ||| || || ||| Sbjct 41840 TATTGTTGAGGATTTTTTAAGAAGTTCACAAATTCCATAATTTCGATTTTGGCTTCCTCA 41781 Query 289330 CATCCTGCTACAT--CAGCAAAA--GTAATATT 289358 || || || |||| | |||||| | |||||| Sbjct 41780 CAACCCGCAACATCCCTGCAAAATTGCAATATT 41748 >seq312 Length=186961 Score = 118 bits (130), Expect = 3e-21 Identities = 191/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||| ||||||||||| ||| || || || ||||| ||| Sbjct 166645 TCCATAGCCTTTATAAGACGACGTTGAATATAACCGGTTTCAGCAGTCTTGACAGCAGTA 166586 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| || ||| | | ||| ||| | || Sbjct 166585 TCGATAAGACCTTCACGACCACCCATAGCGTGAAAGTAGAACTCGGAAGGTGTCAAGCCG 166526 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | || |||| ||||| ||||||| ||| || || ||||||| || | Sbjct 166525 GCAAGATATGAATTCTCCACGAAGCCACGCGACTCAGGACCGTAATCGTC---TTTAATG 166469 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || |||| || | || | |||||||| ||||| || || || |||||||| Sbjct 166468 AAATGCGGCAATGTGCGTTTACGGAAACCGTATGGTATACGTTTACCTTCGACGTTCTGT 166409 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| || | ||| | ||| || ||||| Sbjct 166408 TGACCCACACAAGCAATAACCTGTGAGATATT 166377 >seq324 Length=182476 Score = 91.5 bits (100), Expect = 4e-13 Identities = 192/283 (68%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||||| || | |||||| |||||| | ||||| | ||| ||||||||| | | Sbjct 26759 AAATAGATCGCGTACACGTCTTGCTCCCTGGCCAACGAGTACTTCATCAAATTCAGGACC 26818 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | | || | ||||| || ||||| ||||| || || || | || || || || || Sbjct 26819 AGCAGCATGGAAGAATGGAACGTTTGCCTCGCCAGCCACCGCACGTGCAAGTAGCGTTTT 26878 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || || ||||| ||||| ||||||| || || ||||| | ||| |||| || | | Sbjct 26879 GCCAGTACCAGGAGGTCCAACTAATAGCACACCTTTTGGCAATTTACCCCC--CAAATTG 26936 Query 289269 --ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | | || ||||| || || | |||||| || | || | | || | ||| || ||| Sbjct 26937 GAAAACTTTTCAGGACTTTTAAGAAATTCCACGACCTCTTTTAACTCTTGTTTAGCTTCA 26996 Query 289327 TCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCT 289369 |||||||| |||||| |||| || | || ||| || |||| Sbjct 26997 TCACATCCCTTAACATCATCAAATGTCACATGAATTTC-TTCT 27038 >seq969 Length=96674 Score = 87.8 bits (96), Expect = 5e-12 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||| | | ||||| ||||| || ||||||||||| | ||||| ||||| ||| Sbjct 62043 GCACCATATGAAATCAAGCAATCTCGCTCCATTTCACCCAAACGCAAGCCACCTTCAC-- 61986 Query 233333 GAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 ||| | ||| || | |||||| |||| || | | ||||||| | ||||| || Sbjct 61985 GACTGCGACCTTGCGTGGGTTGACGCGTTAGCACCGCTTTTGGACCGCGCGCACGTGCAT 61926 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACC 233439 |||||||||| ||||||||||||||| || |||||| |||||| Sbjct 61925 GCATTTTATCTTGCACCATATGCTTCAGTTTCTGATAATACACCGGACC 61877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471214909090520