Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq112 134 1e-26 seq749 86.0 5e-12 >seq112 Length=356606 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATAA 34263 ||||| || |||| ||||| ||||| | ||| || || | || || ||| || Sbjct 123234 GGCGGATTCTTCAAAATGAACGTGTTAACCTTGTGATTGACTTTTAAGAGACCATGAAAA 123175 Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGTC 34323 ||||| |||||||| | || | || | | || ||||| || ||| | | || ||| Sbjct 123174 CCGCAAGCTTTGCATGCTTGCGAAATGGTTTGATTCTTAGCCGAGACGGTTAAATCGGTC 123115 Query 34324 TCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTCC 34383 ||||| ||||| |||||||| ||||| || || ||||| ||||||||||| ||||| ||| Sbjct 123114 TCCGGATTGTCGCATTCCGGGCACAAGACGAATTTGCGTATGAAACCATCGAGCAGATCC 123055 Query 34384 TGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 || || || || ||||||||||| || |||||||| ||||| || Sbjct 123054 TGCAATTTGCTGGCATCGTGGGAGCCATTTACGATGAAACGTTCATT 123008 Score = 129 bits (142), Expect = 5e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 ||||| || | || ||||| ||||||| ||||| || || ||||| |||||||| || Sbjct 122925 TTGTAGTCAAATTGTGTTTGAGCGCCCAATTCGCAGCCAAAATACTTGGTCGGGTAGGTG 122866 Query 34492 GCCGGACGTCCAA--GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 ||||||||||| | |||| | || | ||| | ||| || || || || || ||||||| Sbjct 122865 GCCGGACGTCCGATGGCGCGT--GCCACTTCAGCCATATTAACAATAACGGTTTTGATGC 122808 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 |||| || || || |||||||| || | ||| |||||||| || |||||||| || Sbjct 122807 CGTTACCTTTGCCCTCGACCTTAGCTTGCAAGCGTGGCATTTTATAACGGTAGAAAATGT 122748 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 | | ||||| || || || || |||| ||||| Sbjct 122747 CGGTGACATTACGATTCACATTAACAGAACCCAT 122714 >seq749 Length=113903 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||||||||| || || |||||||| || | || |||||| | Sbjct 938 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 879 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || ||| || || ||||| | ||| |||||| Sbjct 878 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 819 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| || || |||||| ||||||||| | ||| || | || || || Sbjct 818 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 759 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||| ||||| || Sbjct 758 ATTCAAAAGGAATCCAC 742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || || || || || ||||| ||||| || | || || || Sbjct 1169 AAAATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCA 1110 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||||| | | | || ||| |||||| ||||||||||| | ||| ||| Sbjct 1109 TCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGAT 1050 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | ||| |||||||| ||||| || | | || || | |||||| Sbjct 1049 CAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTAC 990 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| || || || ||||| Sbjct 989 AACATCCAGAAGGAGTCTAC 970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412680793036280