Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq749 145 7e-30 seq291 111 2e-19 seq2732 104 2e-17 >seq749 Length=113903 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || |||| ||| | ||| ||||||| |||||| || || || |||||||||||| Sbjct 939 GCCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGA 998 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| |||||| ||||||||||| ||| |||| | |||||| ||||| || || Sbjct 999 CAGAGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGG 1058 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| ||| || ||| | | ||| | || || | ||||| || Sbjct 1059 GATTCCTTCTTTGTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAAC 1118 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| ||||| || || ||||| |||||||| Sbjct 1119 CTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 1166 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || |||| |||||||| ||||| |||||||||||| | Sbjct 484 CCACCGCGGAGACGCAATACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGGAC 543 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||| | ||| ||||| || |||| | |||||| ||||| ||||| Sbjct 544 AAGGTACGTCCGTCTTCCAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGA 603 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| ||||||| ||| | | ||| | || || | ||||| || Sbjct 604 ATACCCTCCTTGTCCTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACC 663 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 664 TCCAGAGTAATTGTTTTACCCGTCAAAGTTTTAACGAAGATTTGCATA 711 Score = 100 bits (110), Expect = 3e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || || |||| ||||| |||||||| |||||||||||| | Sbjct 28 CCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGAC 87 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| || | |||||| || || |||||| |||||||||||| || || Sbjct 88 AAGGTACGTCCGTCCTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGGGA 147 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| || || || || || | | || | || |||| ||||| || Sbjct 148 ATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGTTCAACN 207 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||| || | || || ||||| |||||||| Sbjct 208 TCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 254 >seq291 Length=196152 Score = 111 bits (122), Expect = 2e-19 Identities = 1052/1687 (62%), Gaps = 72/1687 (4%) Strand=Plus/Minus Query 150371 ACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTG 150430 || |||||||| | ||| || || || || || ||||| |||||||| || ||| Sbjct 78042 ACAGTAAATTGTATAGCATTTGCAGCTGGTTTCGTACGCAAATAATACATGCCAGTCTTG 77983 Query 150431 AGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTT-GC 150489 || || |||||| ||||| | || | || | | ||| || ||| ||| | || Sbjct 77982 AGACCTGCCTTCCAGCCGTAGAAATGTATAGAAGTGAGCTTAC-CATAGTTGGGCTCAGC 77924 Query 150490 CATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTTC 150549 || || | ||||||||| ||||| |||||||| ||||| || | ||||| ||||||| Sbjct 77923 CACGTGTATGTTGAACGACTGACTCTGATCGATGAATGCACCACGATCTGCAGCCATTTT 77864 Query 150550 AATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATTGTCATGTACAGCTTTTTTAG 150609 ||| || || ||| | |||| ||||| | || |||| || | || Sbjct 77863 GATCG---ATGTT------TTCACGGAAATCTCCCAAACAGTTTTGTATAGATCGCGTAT 77813 Query 150610 ATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTC---TGTTTGCCATGATTGTTTT 150666 | | || || | ||| ||| ||||| | || || || ||| || | Sbjct 77812 GTGCTGTGGTATGGATTCAATATTTTGTATGGATCCGCGACTGGTTATAAT-ATTATTCT 77754 Query 150667 TCGCATACTATTTGTATAGAGATTTAATTTGATTAGATCATCGACCAAGTAGCGGTTGAC 150726 || || | | | || | || | | ||||||| | ||||| | || || Sbjct 77753 TCATATCATCATCCCACAGN-ACCCAACTCGGTTAGATCGCGTAACAAGTGATGATTTAC 77695 Query 150727 AACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATT---ACTGTGAAACGGTTC 150783 |||||||||||| ||||| | ||||| | | | | ||| | ||| ||||||| Sbjct 77694 AACTTGAAATTCACCCGAAAGCACACGACGTGTATAAATATTGGAAGTGT---ACGGTTC 77638 Query 150784 AAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAG 150843 ||||||||| |||||| | |||||||| || | || || |||||| ||| | || Sbjct 77637 AAATGACTCATTGTTGCCCATAATTTGTGCTGTTGAAGCAGTTGGCATGGGCGCAAGCAG 77578 Query 150844 CAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCATAA 150903 ||| || || || | || | || | ||| || ||||| | | ||| | ||| | Sbjct 77577 CAAAGAGTTGCGGACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAATTCCAAAG 77518 Query 150904 CGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACC 150963 ||| ||| ||| ||||| || || || | || || | || | ||| Sbjct 77517 ATCAGTTGGTGTTTTATCCCACATGTCATACTGTAGAATACCCTTACTAACGGGTGAACC 77458 Query 150964 GGCAAACGTGCTATAAGGCTCAC---TAACAGATGCCAGTTCGTAACTGGCCTCGAGCGC 151020 | |||| ||| | || | ||| | | |||| ||||||| || | || Sbjct 77457 TTTATACGTTTCATAGGTGCCATAGTTTTCAGCT---AATTCGCAACTGGCTTCCAAGGC 77401 Query 151021 AGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTA 151080 ||| || | |||||| ||||| | |||||| | | || | || || |||| Sbjct 77400 GCCATAGTAAATAGTTTCGAATATTTGCTGATTCAAACGGAATGCTTCTTCACTTTCGTA 77341 Query 151081 CGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACG 151140 || |||| | || || || ||||| |||||||| ||||| || || |||||||| Sbjct 77340 TGGGTAACGCATTAGAATTAAAGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACG 77281 Query 151141 ATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAA--ATTGCGATCAATAATT 151198 ||| | | ||| ||||| |||| | | | || | || ||| || || ||| Sbjct 77280 ATGTCTGAAATTCGATTTCCTTGCC--TCCGGCAAGGGATAATGATTAATGTCTATGATT 77223 Query 151199 TTATTCAAACTAT---TCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAA 151255 ||||||| | || | || | | |||| | || | | | ||| ||| | Sbjct 77222 TTATTCAGATTACGTGTAACGGTCTTTGTGACTTCTTTGAGGC---GCTTAAAGTCATAC 77166 Query 151256 GTATCATTAT---TGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTT 151312 || | | ||| | | |||| | ||| ||||| || | || || || || Sbjct 77165 GTTTTCTCGGGTGTGACAAACATATTCAAGGCGATCGAAGCCAAGTTGCACACAGCTACC 77106 Query 151313 TCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCG 151372 || ||||| | |||||| || ||||| | ||| ||||| || || || || || Sbjct 77105 TCATCGGGTGACGAATATTCCACAATTTCGGTACATAAATTACTACACTTAATTGTGCCA 77046 Query 151373 CAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCG 151432 ||| |||||| || || || || ||||| || || || |||||||| ||||||||| Sbjct 77045 ACATTCTGTTGATTACTCTTTCGATTACAAGCATCTTTATACAACATGTATGGTGTGCCG 76986 Query 151433 GTTTCGGCTTGAATTTCTATAATGTTTCGCATTAATGTAACCGCGGGCATTTGCTCGCGA 151492 || || |||| ||| |||||| | | || | || | || ||| | | Sbjct 76985 GTCTCCACTTGCGATTCAATAATGCTAAACC--AAAG--ACTTTGTGCTTTTATTTTCTT 76930 Query 151493 AACTGGCCTTTA--TCCTCATAATGTTTG---TACCAGTATTCAAAGTCATCACC--ATA 151545 | |||| | |||| | || ||| || | | ||| || || ||||| ||| Sbjct 76929 AT-TGGCACGTCCTTCCTGTTCATATTTCAGATATAACTTTTCGAACTCTTCACCCCATA 76871 Query 151546 CGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTC 151605 | | || | | ||||||| || |||||||||| ||||| | | |||| Sbjct 76870 CTTCATGTAAACCG--GGACACTTGTGTGGACACATTAGCGACCAGTCTTCATCGGCTTC 76813 Query 151606 AACGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCAC--GCGCTTTG 151663 || ||||||||||||| ||| || | |||||| || | | |||||| | |||| || Sbjct 76812 TACACGTTTCATAAATAGATCAGGTATCCATAAGGCATAGAACAAATCTCTGGCGCGATG 76753 Query 151664 GTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCAC 151723 | |||| ||||| ||||| || | |||| || | ||| || |||||| Sbjct 76752 CT--CTTCTTTGCCAGTGTTTTTTTTCAATTCCAAAAATTCGAAAATATCAGCATGCCAT 76695 Query 151724 GGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT---GCCACCTTGATCCACGTGACGC 151780 ||||| | ||| | || ||||||| ||| || ||||||||||||||| | || Sbjct 76694 GGTTCCAGGTAGATGGCAAAGGCGCCTGGTCGTTTACCGCCACCTTGATCCACATAGCGT 76635 Query 151781 ACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT---- 151836 | |||||||| || ||||||| ||| || | || || | | |||| || || Sbjct 76634 GCTATATTATTGAACACTCGCAACATAGGCACCAAACCATTTGATGTGCTATTTGTACCC 76575 Query 151837 AGATTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCAATACCGCCGCC 151896 | | || | || ||| | |||| || | ||||||| ||||||||||| | Sbjct 76574 ACAATTGCAGTGCCTTTTG----CACGTATGCAATGTACGTTCAGACCAATACCGCCAGC 76519 Query 151897 GTGTTTAGAGATCATGGCGCAATCGT-TTAATGTGTTATAGATGCCGCGAATGCTATCGC 151955 ||| || |||| || || | | | | ||| | | || || |||| |||| Sbjct 76518 AGATTTGGAAATCAATGCACATTGATGTGCAGATGTGA-AAATACCATCAATGGAATCGT 76460 Query 151956 TTTCCATGGTCAATAGAAAACATGAACTCATCTGCGGTGTCAGAGTGCCGGCAGCGAACA 152015 ||||||||| |||||| ||||| || ||||| | |||| | |||||||| | Sbjct 76459 CCACCATGGTCAGTAGAAAGCATGATGACAATTGCGGCTGCTTAGTGGCAGCAGCGAAAA 76400 Query 152016 TGGTTGG 152022 ||||| Sbjct 76399 GCGTTGG 76393 >seq2732 Length=47336 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| |||| | ||| | |||||||| | |||||| ||||| || || || || || Sbjct 1605 GCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGC 1664 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| ||||| | ||| || || ||| | || ||||| || ||||| || || Sbjct 1665 CAATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCGG 1724 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || |||||| || | ||||| | || || | || || || Sbjct 1725 AATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAAC 1784 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | ||||| || || | |||||||||||||||||||| ||| Sbjct 1785 CTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCATTGCT 1836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488348826672000