Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq749 194 3e-44 seq2732 168 1e-36 seq1128 149 1e-30 seq609 127 4e-24 >seq749 Length=113903 Score = 194 bits (214), Expect = 3e-44 Identities = 173/217 (80%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| || || || ||||| || ||||| || || ||||| || ||| | | || Sbjct 951 ACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCC 1010 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| |||||||| || |||||||||| | |||||||||||| || |||||||| || Sbjct 1011 GTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTT 1070 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| ||||||||||| ||||| ||||| || |||| ||| || Sbjct 1071 GTCTTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGAT 1130 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| ||||| ||||| || || || |||||| Sbjct 1131 GGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATT 1167 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || |||||||| || ||||| ||||| || || |||||||| || | Sbjct 710 TACCACCACGTAAGCGTAGAACTAAATGTAGAGTGGATTCCTTTTGAATATTATAGTCGG 769 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || | ||||| ||||| || || | | |||||||||||| | Sbjct 770 ACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGG 829 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| || ||||| ||||| ||||| ||||| ||| || | Sbjct 830 GGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAA 889 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || || || || ||||| || || || || |||||||| Sbjct 890 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 938 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || ||||| ||||||||||| || || || || ||||| | Sbjct 482 TACCACCGCGGAGACGCAATACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGG 541 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| | ||| || || || ||||||| | |||||||||||||| Sbjct 542 ACAAGGTACGTCCGTCTTCCAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGAG 601 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || ||||| |||||||| || |||||||| ||||| |||||| | Sbjct 602 GAATACCCTCCTTGTCCTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAA 661 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || || || || ||||| || || || || || ||||| Sbjct 662 CCTCCAGAGTAATTGTTTTACCCGTCAAAGTTTTAACGAAGATTTGCAT 710 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || ||||| |||||||| || ||||| || || || || || | | | || Sbjct 267 ACGCAATACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTGCGTCC 326 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || | ||| || || || ||||| | | ||||||||||||||| || || ||||| Sbjct 327 GTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGATCTGGAGGAATACCCTCCTT 386 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| || ||||| || ||||| ||||| ||| || ||||||||||| || Sbjct 387 ATCTTGGATCTTGGCCTTTACGTTCTCAATGGTATCTGAAGGCTCAACTTCCAAAGTGAT 446 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || | |||||||| || || ||||| Sbjct 447 GGTTTTGCCGGTGAGGGTCTTTACGAAGATTTGCAT 482 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || ||||| |||||||| ||||| || || || ||||| | Sbjct 26 TACCACCACGGAGACGCAATACCAAGTGAAGAGTAGACTCTTTTTGGATGTTGTAATCGG 85 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||| || | |||||| || || ||||| | | ||| |||||||| | Sbjct 86 ACAAGGTACGTCCGTCCTCCAATTGTTTGCCGGCGAAGATCAAACGTTGCTGATCTGGGG 145 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || || || ||||| ||||| |||||| | Sbjct 146 GAATGCCTTCCTTATCTTGGATCTTAGCCTTAACGTTCTCAATGGTATCTGAAGGTTCAA 205 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || ||||| || | ||||| || || || |||||| Sbjct 206 CNTCCAAGGTAATGGTTTTGCCAGTGAGGGTCTTCACGAAGATTTGCATT 255 >seq2732 Length=47336 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| || ||||| |||| ||||| |||||||| |||||||| |||| Sbjct 1606 CCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAGCC 1665 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| | ||| ||||| ||||| ||||| | |||||||| || || Sbjct 1666 AATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCGGA 1725 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || || || |||| |||||| ||||| ||| || || Sbjct 1726 ATTCCTTCCTTATCTTGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCAACC 1785 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||| || ||||| || || | || ||||| ||||| |||||| Sbjct 1786 TCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCATT 1833 >seq1128 Length=88325 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || || || || || ||||| ||||||||||| || || || Sbjct 337 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 278 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || || ||||| || || || ||||| | | |||||||||||| || Sbjct 277 AAAGTACGTCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGG 218 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||||||||| || || ||||| ||||| ||||| ||||| ||| || ||| Sbjct 217 ATTCCCTCCTTATCTTGGATTTTGGCTTTGACATTCTCAATGGTATCCGAAGGCTCAACT 158 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| || | ||||| || || || ||||| Sbjct 157 TCCAAGGTGATTGTTTTGCCGGTGAGAGTCTTCACGAAGATTTGCAT 111 >seq609 Length=128410 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||||||| || || || || || || || || || || || || | Sbjct 92972 TACCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGG 92913 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | ||||||||| || ||||| | | ||||||||||| | Sbjct 92912 ACAAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGG 92853 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||| || || ||||| |||||||| || || ||| ||| || | Sbjct 92852 GGATACCCTCTTTGTCTTGGATTTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGA 92793 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || || ||||| || || || || || || || ||||||||| Sbjct 92792 CCTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATT 92743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981425154034440