Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq291 215 1e-50 seq1198 93.3 1e-13 seq312 91.5 3e-13 >seq291 Length=196152 Score = 215 bits (238), Expect = 1e-50 Identities = 578/871 (66%), Gaps = 37/871 (4%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||| ||||| ||||||||| | ||||| || | || ||| | || || Sbjct 76219 TATTTTGGTTTTAAAACGCTTGAACGTTCCTATTTGCTAAAATTGAACGGCAAAATTGTT 76278 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 || || || || || ||||| | |||||||| || ||||| ||||| | || || | Sbjct 76279 GAGCGACCACAGCATATGTTAATGCGTGTTGCCATCGGTATACATGGCGAAGACATCGAT 76338 Query 110424 GCTGTTATTGAATGTTATGA--TGTATTAAGTAAAAAGAAAGCTATT-----CATGCTAC 110476 || | || ||| ||| | || || | || | |||| |||||| | Sbjct 76339 GCAGCAATCGAAACTTACAACTTGCTTTCCG-------AACGTTATTTTACACATGCTTC 76391 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGA-CAATTGGCTTCTTGCTTTCTTCTAG 110535 ||| || || || || | ||||| | || |||||| | || |||||||| || Sbjct 76392 TCCAACGCTTTTCGCTGCTGCCACTAA-GCAGCCGCAATTGTCATCATGCTTTCTACTGA 76450 Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGA----TGCTCTTAAAGAAACTGCTCTT 110591 || || ||||| ||||| ||||||| | | ||| | | || ||| | Sbjct 76451 CCATGGTGGACGATTCCATTGATGGTATTT-TCACATCTGCACATCAATG---TGCATTG 76506 Query 110592 ATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA--- 110648 ||||| ||| |||| || |||||| | |||| ||| || || ||||||| Sbjct 76507 ATTTCCAAATCTGCTGGCGGTATTGGTCTGAACGTACATTGCATACGTGCAAAAGGCACT 76566 Query 110649 GCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTC 110708 |||| | | | ||| || | | |||| ||| | || || ||||| |||| ||| Sbjct 76567 GCAATTGTGGGTACA---AATAGCACATCAAATGGTTTGGTGCCTATGTTGCGAGTGTTC 76623 Query 110709 AACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATC 110765 || | | ||| |||||| |||||||||| ||| || ||| | ||||| ||| Sbjct 76624 AATAATATAGCACGCTATGTGGATCAAGGTGGCGGTAAACGACCAGGCGCCTTTGCCATC 76683 Query 110766 TATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAA-GG 110824 || || ||||| |||||| | ||||| || ||||| || ||| || ||||| || || Sbjct 76684 TACCTGGAACCATGGCATGCTGATATTTTCGAATTTTTGGAA-TTGAAAAAAAACACTGG 76742 Query 110825 ATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCAT 110884 ||||| || | || | ||||| || ||||| | ||||| | ||| |||| || Sbjct 76743 CAAAGAAGAGCATCGCGCCAGAGATTTGTTCTATGCCTTATGGATACCTGATCTATTTAT 76802 Query 110885 GAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCT 110944 ||||||||| ||| ||| ||||| || |||||||| || | ||| ||| | Sbjct 76803 GAAACGTGTAGAAGCCGATGAAGACTGGTCGCTAATGTGTCCACACAAGTGTCCCGGTTT 76862 Query 110945 ATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAA 111004 | ||| |||| || ||||||| ||| | | || ||||||||| | ||||| | Sbjct 76863 ACATGAAGTATGGGGTGAAGAGTTCGAAAAGTTATATCTGAAATATGAACAGGAAGG-AC 76921 Query 111005 GTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTG 111063 || | || ||| | | || ||| |||||||| | || ||||||| ||||| | Sbjct 76922 GTGCCAATAAGAAAATAAAAGCACAAAGTCTTTGGTTTAGCATTATTGAATCGCAAGTGG 76981 Query 111064 AAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGA 111123 | || || || || || || |||||||||||| | |||||| || ||||||| || Sbjct 76982 AGACCGGCACACCATACATGTTGTATAAAGATGCTTGTAATCGAAAGAGTAATCAACAGA 77041 Query 111124 ATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 || | || |||||||||| ||||||||| || Sbjct 77042 ATGTTGGCACAATTAAGTGTAGTAATTTATG 77072 >seq1198 Length=84828 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 || || |||||| | ||||||||||| ||||||||||| || ||| ||| ||| ||| Sbjct 57634 GTGCTTTTCAATCGCCAACCATCACTACATAAAATGTCGATTATGTGTCACCAAGCTAAA 57575 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | | |||||||| || || | ||||||||||||| ||||| || ||| Sbjct 57574 GTGCAGCCACAACGTACATTTCGTTTTAACGAGTGTGCTTGTACGCCATATAACGCAGAT 57515 Query 305450 TTTGATGGAGATGAAATGAAT 305470 || || || |||||||||||| Sbjct 57514 TTCGACGGCGATGAAATGAAT 57494 >seq312 Length=186961 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| ||| ||||| |||| | |||||| | || ||| || | ||||||||| Sbjct 165265 AGACATTTACGCGACGATGATCTGGTTATTTTCAATCGTCAGCCAACATTACATAAAATG 165324 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| ||| ||||| ||||| || | | ||||| || | ||| | || Sbjct 165325 AGTATGATGGGGCATCGTGTCAAGGTATTGCCTTGGTCTACATTCCGTATGAATTT--GT 165382 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 || |||| || ||||| || ||||| || |||||||||||||| |||| || || Sbjct 165383 CCT-GTACTTCACCATATAACGCTGATTTCGACGGAGATGAAATGAACTTGCACGTGCCG 165441 Query 305483 CAATC 305487 ||||| Sbjct 165442 CAATC 165446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186326814993560