Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq749 123 6e-23
seq609 102 2e-16
seq2732 95.1 3e-14
>seq749
Length=113903
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || ||||| |||||||||||||| || ||| || || | ||
Sbjct 467 AAGACCCTCACCGGCAAAACCATCACTTTGGAAGTTGAGCCTTCAGATACCATTGAGAAC 408
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| ||||| || || || ||| || || ||| | | ||||||
Sbjct 407 GTAAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCAGATCAACAACGTTTGATCTTC 348
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| ||||| ||||| || ||| | || ||| |||| |||||| ||||||| ||||||
Sbjct 347 GCCGGTAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAACATCCAGAAGGAGTCT 288
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||||| | || ||| | || ||
Sbjct 287 ACTCTTCACTTGGTATTGCGTCTCCG 262
Score = 118 bits (130), Expect = 3e-21
Identities = 152/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| | || || ||||| || ||| |||| || ||| ||| || ||| | |||
Sbjct 695 AAAACTTTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCCGATACAATTGAAAAC 636
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||||||| ||||| || || || || ||| || || ||| | | |||||
Sbjct 635 GTTAAAGCAAAA-ATTCAGGACAAGGAGGGTATTCCTCCAGATCAACAACGTTTAATCTT 577
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
|||||| ||||| |||||||| ||| | || ||| ||||||||||| |||| || || ||
Sbjct 576 CGCCGGTAAGCAATTGGAAGACGGACGTACCTTGTCCGATTACAACATCCAAAAGGAATC 517
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||||| | || ||| | || ||
Sbjct 516 TACTCTTCACTTGGTATTGCGTCTCCG 490
Score = 116 bits (128), Expect = 9e-21
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || ||||| || || ||||| || ||| ||| || || | ||
Sbjct 239 AAGACCCTCACTGGCAAAACCATTACCTTGGANGTTGAACCTTCAGATACCATTGAGAAC 180
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| ||||| || ||||| ||| || || ||| | | ||||||
Sbjct 179 GTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCCCCAGATCAGCAACGTTTGATCTTC 120
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| || || ||||| || ||| | || ||| ||||||||||| |||| |||||||||
Sbjct 119 GCCGGCAAACAATTGGAGGACGGACGTACCTTGTCCGATTACAACATCCAAAAAGAGTCT 60
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||||| | || ||| | || ||
Sbjct 59 ACTCTTCACTTGGTATTGCGTCTCCG 34
Score = 102 bits (112), Expect = 2e-16
Identities = 132/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252
|| || || || |||||| |||| || ||| || || || | ||| || |||||
Sbjct 1142 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAAAATGTTAAAGCT 1083
Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312
|| ||||||||| ||||||||||| || || ||| | | ||||| ||||| ||
Sbjct 1082 AA-GATTCAAGACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAA 1024
Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372
|| ||||||| ||| | ||| || ||||||||||| ||||||| |||||||| |||||
Sbjct 1023 ACAACTGGAAGACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCA 964
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
|| || | ||| || | ||||||||||||||| ||||||| || ||||| | ||| ||
Sbjct 262 CGGAGACGCAATACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTG 321
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| ||| || |||| ||||| ||||||||||| | |||||||||
Sbjct 322 CGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGA 366
>seq609
Length=128410
Score = 102 bits (112), Expect = 2e-16
Identities = 165/231 (71%), Gaps = 11/231 (5%)
Strand=Plus/Plus
Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223
|||||| ||||| || |||||| | || || || || ||||| || || || ||
Sbjct 92741 AAAATG---CAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAG 92797
Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282
||||||||| ||||| || ||||| ||| || ||||| ||||| || || ||
Sbjct 92798 CCTTCTGACACCATCGAAAATGTCAAAGCTAAA-ATCCAAGACAAAGAGGGTATCCCCCC 92856
Query 206283 GGACGCTCAA-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339
|| |||| || || |||||||||||||| || ||||||||||| | || ||| |
Sbjct 92857 AGA---TCAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTGTC 92913
Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
||| |||||| |||| || ||||| || || || | ||| || | |||||
Sbjct 92914 CGACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCG 92964
>seq2732
Length=47336
Score = 95.1 bits (104), Expect = 3e-14
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || || || |||||| | || || || ||| || || | |||
Sbjct 1817 AAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCGGATACTATTGAACAT 1758
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| || |||||||| || ||||||||| ||| || || | || || ||
Sbjct 1757 GTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATCAACAGCGTCTAATTTTT 1698
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||||||||| ||||||||||| | || ||||| || || || | ||||||||||||
Sbjct 1697 GCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAATATTCAGAAAGAGTCT 1638
Query 206365 AC 206366
||
Sbjct 1637 AC 1636
Score = 87.8 bits (96), Expect = 4e-12
Identities = 68/81 (84%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 204776 GTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 204835
|||||||||||||| | ||||||||||||||| || | |||||||||| |||||||||
Sbjct 1636 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 1695
Query 204836 GCGAAGATAAGCCGTTGTTGA 204856
|| || || || || ||||||
Sbjct 1696 GCAAAAATTAGACGCTGTTGA 1716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181336859155160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |