Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq749 123 6e-23 seq609 102 2e-16 seq2732 95.1 3e-14 >seq749 Length=113903 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| |||||||||||||| || ||| || || | || Sbjct 467 AAGACCCTCACCGGCAAAACCATCACTTTGGAAGTTGAGCCTTCAGATACCATTGAGAAC 408 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| ||||| || || || ||| || || ||| | | |||||| Sbjct 407 GTAAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCAGATCAACAACGTTTGATCTTC 348 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| ||||| || ||| | || ||| |||| |||||| ||||||| |||||| Sbjct 347 GCCGGTAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAACATCCAGAAGGAGTCT 288 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | || ||| | || || Sbjct 287 ACTCTTCACTTGGTATTGCGTCTCCG 262 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || ||| |||| || ||| ||| || ||| | ||| Sbjct 695 AAAACTTTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCCGATACAATTGAAAAC 636 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| ||||| || || || || ||| || || ||| | | ||||| Sbjct 635 GTTAAAGCAAAA-ATTCAGGACAAGGAGGGTATTCCTCCAGATCAACAACGTTTAATCTT 577 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| ||||| |||||||| ||| | || ||| ||||||||||| |||| || || || Sbjct 576 CGCCGGTAAGCAATTGGAAGACGGACGTACCTTGTCCGATTACAACATCCAAAAGGAATC 517 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||||| | || ||| | || || Sbjct 516 TACTCTTCACTTGGTATTGCGTCTCCG 490 Score = 116 bits (128), Expect = 9e-21 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| || || ||||| || ||| ||| || || | || Sbjct 239 AAGACCCTCACTGGCAAAACCATTACCTTGGANGTTGAACCTTCAGATACCATTGAGAAC 180 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| ||| || || ||| | | |||||| Sbjct 179 GTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCCCCAGATCAGCAACGTTTGATCTTC 120 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||| || ||| | || ||| ||||||||||| |||| ||||||||| Sbjct 119 GCCGGCAAACAATTGGAGGACGGACGTACCTTGTCCGATTACAACATCCAAAAAGAGTCT 60 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | || ||| | || || Sbjct 59 ACTCTTCACTTGGTATTGCGTCTCCG 34 Score = 102 bits (112), Expect = 2e-16 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || || || |||||| |||| || ||| || || || | ||| || ||||| Sbjct 1142 ACTGGCAAGACCATCACTCTGGAGGTTGAACCATCCGATACTATTGAAAATGTTAAAGCT 1083 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||||||||| ||||||||||| || || ||| | | ||||| ||||| || Sbjct 1082 AA-GATTCAAGACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAA 1024 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||| ||| | ||| || ||||||||||| ||||||| |||||||| ||||| Sbjct 1023 ACAACTGGAAGACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCA 964 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | ||||||||||||||| ||||||| || ||||| | ||| || Sbjct 262 CGGAGACGCAATACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTG 321 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||| || |||| ||||| ||||||||||| | ||||||||| Sbjct 322 CGTCCGTCCTCCAATTGCTTACCGGCGAAGATCAAACGTTGTTGA 366 >seq609 Length=128410 Score = 102 bits (112), Expect = 2e-16 Identities = 165/231 (71%), Gaps = 11/231 (5%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| || |||||| | || || || || ||||| || || || || Sbjct 92741 AAAATG---CAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAG 92797 Query 206224 AGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 ||||||||| ||||| || ||||| ||| || ||||| ||||| || || || Sbjct 92798 CCTTCTGACACCATCGAAAATGTCAAAGCTAAA-ATCCAAGACAAAGAGGGTATCCCCCC 92856 Query 206283 GGACGCTCAA-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 || |||| || || |||||||||||||| || ||||||||||| | || ||| | Sbjct 92857 AGA---TCAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTGTC 92913 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| |||||| |||| || ||||| || || || | ||| || | ||||| Sbjct 92914 CGACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCG 92964 >seq2732 Length=47336 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| | || || || ||| || || | ||| Sbjct 1817 AAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTCGGATACTATTGAACAT 1758 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||||||| ||| || || | || || || Sbjct 1757 GTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATCAACAGCGTCTAATTTTT 1698 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| ||||||||||| | || ||||| || || || | |||||||||||| Sbjct 1697 GCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAATATTCAGAAAGAGTCT 1638 Query 206365 AC 206366 || Sbjct 1637 AC 1636 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 204776 GTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 204835 |||||||||||||| | ||||||||||||||| || | |||||||||| ||||||||| Sbjct 1636 GTAGACTCTTTCTGAATATTATAGTCAGCCAATGTGCGACCATCTTCCAATTGCTTTCCG 1695 Query 204836 GCGAAGATAAGCCGTTGTTGA 204856 || || || || || |||||| Sbjct 1696 GCAAAAATTAGACGCTGTTGA 1716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181336859155160