Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq217 104 7e-19 seq1340 102 3e-18 seq12883 100 9e-18 seq614 100 9e-18 seq20982 98.7 3e-17 seq104 98.7 3e-17 >seq217 Length=239686 Score = 104 bits (114), Expect = 7e-19 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 2763 TTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGG 2821 |||||| || ||| |||||||||||||||||| |||||||||||||||||||||||| || Sbjct 97732 TTTATGTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGG 97673 Query 2822 TTCAACCCCGGGCTTCAGC 2840 ||||| |||||| ||| || Sbjct 97672 TTCAATCCCGGGTTTCGGC 97654 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 92514 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 92455 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 92454 CCGGGTTTCGGC 92443 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 97257 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 97316 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 97317 CCGGGTTTCGGC 97328 >seq1340 Length=78411 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 22597 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTC 22538 Query 2825 AACCCCGGGCTTCAGC 2840 || |||||| ||| || Sbjct 22537 AATCCCGGGTTTCGGC 22522 Score = 100 bits (110), Expect = 9e-18 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 2757 ACTGTGTTTA-TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGT 2815 ||| | |||| | || ||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 23114 ACTTTTTTTACTTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGT 23055 Query 2816 CCCTGGTTCAACCCCGGGCTTCAGC 2840 ||| ||||||| |||||| ||| || Sbjct 23054 CCCCGGTTCAATCCCGGGTTTCGGC 23030 Score = 100 bits (110), Expect = 9e-18 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 2759 TGTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCC 2818 ||| | |||| | ||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 28172 TGTATATATGCC-GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCC 28230 Query 2819 TGGTTCAACCCCGGGCTTCAGC 2840 ||||||| |||||| ||| || Sbjct 28231 CGGTTCAATCCCGGGTTTCGGC 28252 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 23523 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 23464 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 23463 CCGGGTTTCGGC 23452 >seq12883 Length=2121 Score = 100 bits (110), Expect = 9e-18 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 2765 TATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||| || ||| |||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1365 TATGCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTT 1306 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| |||||| ||| || Sbjct 1305 CAATCCCGGGTTTCGGC 1289 >seq614 Length=128004 Score = 100 bits (110), Expect = 9e-18 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 2765 TATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||| || ||| |||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 82340 TATGCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTT 82281 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| |||||| ||| || Sbjct 82280 CAATCCCGGGTTTCGGC 82264 >seq20982 Length=1362 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 364 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 423 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 424 CCGGGTTTCGGC 435 >seq104 Length=369130 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 279334 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 279393 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 279394 CCGGGTTTCGGC 279405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844059574200