Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq3347 385 1e-102 >seq3347 Length=39956 Score = 385 bits (426), Expect = 1e-102 Identities = 540/756 (71%), Gaps = 4/756 (1%) Strand=Plus/Plus Query 23517 CCTCACACTTCGAATGCCAGTTGAGGGGTAAAGACGTCCCGTTCAGCGTTGTAATTAAGT 23576 ||||| | ||| ||||| || || || || || ||| || ||| ||| | | Sbjct 30363 CCTCAAATTTCAAATGCGAGCTGGGGCGTTAATTTGTCGGCTTTCTCGTCATAAATTAAC 30422 Query 23577 GAACTGGCACTGTTGAATGATTCAATGCGTTCCACAAGAACTTGCGTACGGGTTTCTTTA 23636 || ||||| ||||| || ||||| ||||| ||||| || || | || || ||||| Sbjct 30423 GAGCTGGCGCTGTTAAAAGATTCTATGCGCTCCACCAGCACAGCGGCGCGTGTCTCTTTG 30482 Query 23637 CTTGCGGGAGCATATGGCGAACCTACCCAGGATTTGTCGATGCCTATATTTCTTGCGACG 23696 || || || ||||| | ||| ||| | ||||| || | |||||||| || ||| Sbjct 30483 CTGGCTGGCGCATAGGCCGATTTATTCCACAACTTGTCAATACTGATATTTCTGGCCACG 30542 Query 23697 TTCGTGCTGTCTGCAGACGAAAGCGGTACATGAGTAAAAATGTCTTTATTTAACATCCGT 23756 || ||||||||||| ||||| || || || | |||||||| | ||||| | ||||| Sbjct 30543 TTTGTGCTGTCTGCCGACGACAGGGGAACCTCAGTAAAAAGGCTCTTATTCAGCATCCTC 30602 Query 23757 AACCCATGAATCTTGGTGATTGGGTAGCCGTACTGATCTACAACATGACGTATAAGATCG 23816 | || |||| ||| || || || || |||| | ||||||||| || || |||||||| Sbjct 30603 AGGCCGTGAAGCTTAGTAATCGGATATCCGTTTTTATCTACAACGTGCCGGATAAGATCC 30662 Query 23817 CGTAGTTTAGCCCGACACGCTCTCGGTCGTTTTGCATCGTATTCCCCCATCGAGCCGATG 23876 | || ||| ||| || | |||| ||| || |||||||| ||||| ||||||| Sbjct 30663 TTCAACTTTGCCGCACATGCCTTAGGTCTTTTCGCGTCGTATTCGCCCATACTGCCGATG 30722 Query 23877 CAGACGCGGGGAAACTCATGGCACAGACGAATAAATCGCTCATCTGGTTCGTTCATGTGC 23936 || ||||| || | || ||||||||||| | ||| || ||||||||||| | ||| Sbjct 30723 CATACGCGCGGGTATTCGTGGCACAGACGCACAAACTTTTCCTCTGGTTCGTTAAAGTGG 30782 Query 23937 CACACCGGAGCACCAATAAATTTACCGTGAGGCCATGCCGCAATCAGGGCGTCATTCTCT 23996 ||||||| || || | || ||| ||||| |||||| | ||||| || || || |||||| Sbjct 30783 TACACCGGTGCGCCCACAACTTTCCCGTGTGGCCATTCAGCAATAAGAGCATCGTTCTCT 30842 Query 23997 TCACTGGTTCCGCCGATAACATCCGGGATAACCGCGAATGAGAAACGAGGGTGATTGCCC 24056 |||| | |||| || || || || || || ||||| || | || || |||||||| | Sbjct 30843 TCACAGCTTCCCCCTATCACGTCGGGAATCACCGCAAACGCAAAGCGCGGGTGATTCATC 30902 Query 24057 CAGCGTTCAACAAATCTGTAATATTCATTCCAGTCTACGGCCTTGTTTTTTGTCCAG--A 24114 ||||| | ||||| |||||||||| ||| || || |||||| ||| || | Sbjct 30903 CAGCGAGCCACAAACGCGTAATATTCAGGCCACGAGACAGC--TGTTTTCTGTTTAGAAA 30960 Query 24115 ATGTGAATGCACCATTATCAAGAGCAAATGATTGGGTGACTTCGGAAGCCAGATCAATCT 24174 | |||||||||||||||| || ||||| || ||| || ||| || |||| | | | || Sbjct 30961 AGCTGAATGCACCATTATCCAGGGCAAAGGACTGGCAGATTTCAGAGGCCATAGCCAGCT 31020 Query 24175 GAGCTGGATTAGCAAAACTGATGAATGCGTGTCTGCCTTTCCAGGCTTTCAACGCACAGG 24234 | || || ||||| ||||| || |||||||| ||||||||||| ||| || || | Sbjct 31021 GGTAAGGTTTCGCAAAGCTGATAAAAGCGTGTCTACCTTTCCAGGCGCGCAAAGCGCATG 31080 Query 24235 TATCGGGAGTTATTGGACCACCGTGAAAATGAATCA 24270 | || || || || || |||||||||||||| |||| Sbjct 31081 TGTCAGGTGTGATCGGGCCACCGTGAAAATGGATCA 31116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122676623477520