Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq157 188 6e-43 seq225 161 8e-35 seq931 116 3e-21 >seq157 Length=290505 Score = 188 bits (208), Expect = 6e-43 Identities = 393/577 (68%), Gaps = 10/577 (2%) Strand=Plus/Plus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 |||||||| ||||||||||| || || |||||||| ||||||| ||| |||||||| || Sbjct 144631 GATAGGGAGGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGGCC 144690 Query 40914 AAATAT-GACACT--ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGC 40970 || || || ||| | | || | || | || | || || |||||| | ||| Sbjct 144691 AAGTACAGAAACTGCAAGGACAGT---TACAAAGATGAGGGTATAGATCAACTTCAGCAA 144747 Query 40971 GTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAAC 41030 || || || || || | | | |||| || || ||||| ||| ||| || ||||| Sbjct 144748 GTAATTGACACAATCAGAAACAATCCAAATGATCGGCGTATTATAATGTCTGCTTGGAAT 144807 Query 41031 CCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATG-TCAGTTTTACGT 41089 || || | | | ||||| | ||||||||||| |||| || || |||| || Sbjct 144808 CCTGTCGATATCCCTCAAATGGCTCTACCACCTTGTCA-TTGTCTTGCACAATTTTTTGT 144866 Query 41090 TTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGT 41149 | |||||| ||| | || |||||||| || ||| | | || |||||| | || || Sbjct 144867 TGCCAATGGAGAATTATCTTGTCAATTATACCAACGCAGTGCCGATATGGGATTGGGTGT 144926 Query 41150 CCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTT 41209 || ||||| || || || ||| |||| || ||||||||||| || |||| || | Sbjct 144927 ACCATTTAATATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATATTACTGATCT 144986 Query 41210 AAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269 ||| || || ||||| ||||| || || |||| |||| | || | |||||| || || Sbjct 144987 CCGACCAGGGGATTTTGTCCACACTTTGGGCGATGCACATGTCTATAATAATCATATTGA 145046 Query 41270 GCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACG 41329 | |||| |||||| | || ||||||||| | ||||| | |||||||||| || Sbjct 145047 AGCATTAAAAGAACAGTTAACGCGAAAACCTCGGGAGTTTCCTAAATTACTTATTAAGCG 145106 Query 41330 CGCTGTTGAAA-ACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATC 41388 | ||| ||| |||||| || || | | || || | || ||| ||||||| Sbjct 145107 TG-AGTTAAAATGCATTGAAGACTTCACGTTTAAGGACTTCGAACTTATCGACTACAATC 145165 Query 41389 CGTACCCTAAAATCCACATGGACATGTCTGTATGATA 41425 |||| || ||||| ||||| ||| |||| | ||| Sbjct 145166 CGTATCCAAAAATTTCAATGGAAATGGCTGTTTAATA 145202 >seq225 Length=233467 Score = 161 bits (178), Expect = 8e-35 Identities = 365/541 (67%), Gaps = 11/541 (2%) Strand=Plus/Plus Query 43751 GCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG 43810 ||| | || || || ||||||| || ||||| ||| | ||||||| | | ||||| Sbjct 26181 GCAGAAGCATCGTTCTGGACAGTAGGGGAAGTAGATCTTTCTAAAGATATGGATGATTGG 26240 Query 43811 ATTGCAT-TAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCT 43867 ||| | ||| | || ||| ||||||||| || || || || ||||| || Sbjct 26241 ---GCACGTCTAACTGATAATGAACGACATTTTATTTCACACGTGTTAGCCTTTTTCGCC 26297 Query 43868 GCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATT 43926 || || || || || ||||||||| | ||| || || ||| || ||||| ||| | Sbjct 26298 GCATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGCTTCTGC-CAGGAAGTCCAAGT 26356 Query 43927 ACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAAT 43986 |||| ||||| || || ||||| ||||||||||| || || ||| | ||||| ||||| Sbjct 26357 GACAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAAT 26416 Query 43987 GTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAA 44046 ||| || | | || ||||| || || || || | | | | | || || || || Sbjct 26417 GTATAGCATATTAATTGATACATATATTAAGGACTCGAAACAAAGGAATTACTTATTCAA 26476 Query 44047 TGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106 ||| ||||| ||| | ||||| | || | ||| ||||| ||||| ||| ||||| Sbjct 26477 TGCTATAGAGACAATGCCTGCCGTAAAGCGTAAGGCAGATTGGGCGCTTGCTTGGATTTC 26536 Query 44107 TTCAAA---TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 || || | ||||| ||||| | | || ||||| | || ||||| ||||| Sbjct 26537 CTCGAAGTCGGCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAGGTATTTT 26596 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 ||| || ||||| | || || ||| | |||||||| ||||| ||||| || || Sbjct 26597 CTTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTT 26656 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| ||||| |||| || ||||| || | ||||| || || || || || Sbjct 26657 GACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCGCATGTTT 26716 Query 44284 G 44284 | Sbjct 26717 G 26717 >seq931 Length=99288 Score = 116 bits (128), Expect = 3e-21 Identities = 263/389 (68%), Gaps = 10/389 (3%) Strand=Plus/Plus Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG--- 19604 |||||| |||||||| | |||||| | || || ||||| || | || || | Sbjct 51890 TTTGCATATTATAATTTTCGATGAAATAGATGCGATCTGCAAAGCCCGTGGCTCGGTCGC 51949 Query 19605 TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 || ||| || ||||| || || || || |||||| | || | ||| | || ||||| Sbjct 51950 TGGCAATAGTGGCGTACACGATACAGTGGTAAATCAATTGCTCGCTAAAATCGATGGTGT 52009 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721 | |||||||| || ||||| || || |||||||| || || | || | || ||| Sbjct 52010 CGAACAACTGAACAACATTTTGGTGATCGGCATGACAAACAGGCGTGACATGATTGACGA 52069 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781 || || | ||||||||||| ||||| || | || || |||| || ||| ||||| Sbjct 52070 AGCTTTGCTGCGACCCGGTCGCTTGGAGGTACAAATGGAGATTAGTTTGCCCAATGAAGA 52129 Query 19782 TGGACGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACAAAATAACCTTTTAA 19840 || |||||| ||||||| || |||||||| | | | ||||| || ||| | Sbjct 52130 GGGTCGTGTGCAAATTTTGAATATACATAC-TAAGCGTATGCGGGAATTCAACAAGATTG 52188 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 | ||||| || || ||| ||||| || | || || |||| ||| ||||| || Sbjct 52189 CCGGTGATGTTGA-CTCGAAGGAAATCGCTACACTAACGAAGAACTTTAGTGGCGCTGAG 52247 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 || || || |||||| | || || ||||| Sbjct 52248 CTGGAAGGTTTAGTGCGTGCAGCACAATC 52276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397301185919800