Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq157 188 6e-43
seq225 161 8e-35
seq931 116 3e-21
>seq157
Length=290505
Score = 188 bits (208), Expect = 6e-43
Identities = 393/577 (68%), Gaps = 10/577 (2%)
Strand=Plus/Plus
Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913
|||||||| ||||||||||| || || |||||||| ||||||| ||| |||||||| ||
Sbjct 144631 GATAGGGAGGAAGGTGATCTAGGCCCAGTTTATGGTTTTCAGTGGCGTCATTTTGGGGCC 144690
Query 40914 AAATAT-GACACT--ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGC 40970
|| || || ||| | | || | || | || | || || |||||| | |||
Sbjct 144691 AAGTACAGAAACTGCAAGGACAGT---TACAAAGATGAGGGTATAGATCAACTTCAGCAA 144747
Query 40971 GTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAAC 41030
|| || || || || | | | |||| || || ||||| ||| ||| || |||||
Sbjct 144748 GTAATTGACACAATCAGAAACAATCCAAATGATCGGCGTATTATAATGTCTGCTTGGAAT 144807
Query 41031 CCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATG-TCAGTTTTACGT 41089
|| || | | | ||||| | ||||||||||| |||| || || |||| ||
Sbjct 144808 CCTGTCGATATCCCTCAAATGGCTCTACCACCTTGTCA-TTGTCTTGCACAATTTTTTGT 144866
Query 41090 TTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGT 41149
| |||||| ||| | || |||||||| || ||| | | || |||||| | || ||
Sbjct 144867 TGCCAATGGAGAATTATCTTGTCAATTATACCAACGCAGTGCCGATATGGGATTGGGTGT 144926
Query 41150 CCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTT 41209
|| ||||| || || || ||| |||| || ||||||||||| || |||| || |
Sbjct 144927 ACCATTTAATATTGCCTCGTACGCTTTGCTTACCTATATGATTGCTCATATTACTGATCT 144986
Query 41210 AAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269
||| || || ||||| ||||| || || |||| |||| | || | |||||| || ||
Sbjct 144987 CCGACCAGGGGATTTTGTCCACACTTTGGGCGATGCACATGTCTATAATAATCATATTGA 145046
Query 41270 GCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACG 41329
| |||| |||||| | || ||||||||| | ||||| | |||||||||| ||
Sbjct 145047 AGCATTAAAAGAACAGTTAACGCGAAAACCTCGGGAGTTTCCTAAATTACTTATTAAGCG 145106
Query 41330 CGCTGTTGAAA-ACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATC 41388
| ||| ||| |||||| || || | | || || | || ||| |||||||
Sbjct 145107 TG-AGTTAAAATGCATTGAAGACTTCACGTTTAAGGACTTCGAACTTATCGACTACAATC 145165
Query 41389 CGTACCCTAAAATCCACATGGACATGTCTGTATGATA 41425
|||| || ||||| ||||| ||| |||| | |||
Sbjct 145166 CGTATCCAAAAATTTCAATGGAAATGGCTGTTTAATA 145202
>seq225
Length=233467
Score = 161 bits (178), Expect = 8e-35
Identities = 365/541 (67%), Gaps = 11/541 (2%)
Strand=Plus/Plus
Query 43751 GCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG 43810
||| | || || || ||||||| || ||||| ||| | ||||||| | | |||||
Sbjct 26181 GCAGAAGCATCGTTCTGGACAGTAGGGGAAGTAGATCTTTCTAAAGATATGGATGATTGG 26240
Query 43811 ATTGCAT-TAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCT 43867
||| | ||| | || ||| ||||||||| || || || || ||||| ||
Sbjct 26241 ---GCACGTCTAACTGATAATGAACGACATTTTATTTCACACGTGTTAGCCTTTTTCGCC 26297
Query 43868 GCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTT-TGCGCAAGAAGTTCAATT 43926
|| || || || || ||||||||| | ||| || || ||| || ||||| ||| |
Sbjct 26298 GCATCTGATGGTATTGTGAATGAAAATGTAGTTGAACGCTTCTGC-CAGGAAGTCCAAGT 26356
Query 43927 ACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAAT 43986
|||| ||||| || || ||||| ||||||||||| || || ||| | ||||| |||||
Sbjct 26357 GACAGAGGCACGTTGCTTCTATGGATTTCAAATTGCGATGGAGAATGTGCATTCTGAAAT 26416
Query 43987 GTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAA 44046
||| || | | || ||||| || || || || | | | | | || || || ||
Sbjct 26417 GTATAGCATATTAATTGATACATATATTAAGGACTCGAAACAAAGGAATTACTTATTCAA 26476
Query 44047 TGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106
||| ||||| ||| | ||||| | || | ||| ||||| ||||| ||| |||||
Sbjct 26477 TGCTATAGAGACAATGCCTGCCGTAAAGCGTAAGGCAGATTGGGCGCTTGCTTGGATTTC 26536
Query 44107 TTCAAA---TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163
|| || | ||||| ||||| | | || ||||| | || ||||| |||||
Sbjct 26537 CTCGAAGTCGGCCAACTTTGGTGAACGTGTAATTGCATTTGCTGCCGTTGAAGGTATTTT 26596
Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223
||| || ||||| | || || ||| | |||||||| ||||| ||||| || ||
Sbjct 26597 CTTCAGTGGCAGTTTTGCTTCGATCTTCTGGCTTAAGAAACGTGGTTTAATGCCAGGCTT 26656
Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283
||| ||||| ||||| |||| || ||||| || | ||||| || || || || ||
Sbjct 26657 GACATTTTCCAATGAACTAATTTCACGAGATGAGGGACTTCATTGTGACTTCGCATGTTT 26716
Query 44284 G 44284
|
Sbjct 26717 G 26717
>seq931
Length=99288
Score = 116 bits (128), Expect = 3e-21
Identities = 263/389 (68%), Gaps = 10/389 (3%)
Strand=Plus/Plus
Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG--- 19604
|||||| |||||||| | |||||| | || || ||||| || | || || |
Sbjct 51890 TTTGCATATTATAATTTTCGATGAAATAGATGCGATCTGCAAAGCCCGTGGCTCGGTCGC 51949
Query 19605 TGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661
|| ||| || ||||| || || || || |||||| | || | ||| | || |||||
Sbjct 51950 TGGCAATAGTGGCGTACACGATACAGTGGTAAATCAATTGCTCGCTAAAATCGATGGTGT 52009
Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721
| |||||||| || ||||| || || |||||||| || || | || | || |||
Sbjct 52010 CGAACAACTGAACAACATTTTGGTGATCGGCATGACAAACAGGCGTGACATGATTGACGA 52069
Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781
|| || | ||||||||||| ||||| || | || || |||| || ||| |||||
Sbjct 52070 AGCTTTGCTGCGACCCGGTCGCTTGGAGGTACAAATGGAGATTAGTTTGCCCAATGAAGA 52129
Query 19782 TGGACGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACAAAATAACCTTTTAA 19840
|| |||||| ||||||| || |||||||| | | | ||||| || ||| |
Sbjct 52130 GGGTCGTGTGCAAATTTTGAATATACATAC-TAAGCGTATGCGGGAATTCAACAAGATTG 52188
Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899
| ||||| || || ||| ||||| || | || || |||| ||| ||||| ||
Sbjct 52189 CCGGTGATGTTGA-CTCGAAGGAAATCGCTACACTAACGAAGAACTTTAGTGGCGCTGAG 52247
Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATC 19928
|| || || |||||| | || || |||||
Sbjct 52248 CTGGAAGGTTTAGTGCGTGCAGCACAATC 52276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397301185919800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |