Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq749 170 2e-37 seq2732 168 8e-37 seq1128 149 7e-31 seq291 100 3e-16 seq127 82.4 9e-11 >seq749 Length=113903 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | || || || || |||||||| |||||||| | Sbjct 710 ATGCAAATCTTCGTTAAAACTTTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCC 651 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || || |||||||||||||||||||| ||||||||||| || Sbjct 650 GATACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAGGGTATTCCTCCAGATCAA 591 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| || || ||||||||| | || || | |||||| | | || || || Sbjct 590 CAACGTTTAATCTTCGCCGGTAAGCAATTGGAAGACGGACGTACCTTGTCCGATTACAAC 531 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| |||||||| | || |||||||| |||||||| Sbjct 530 ATCCAAAAGGAATCTACTCTTCACTTGGTATTGCGTCTCCGCGGTGG 484 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || |||||||| || || ||| | || |||||| | Sbjct 482 ATGCAAATCTTCGTAAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTTGAGCCTTCA 423 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||||| || || || || |||||||| ||||||||||| || Sbjct 422 GATACCATTGAGAACGTAAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCAGATCAA 363 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || || ||||||||| | ||||| | || || | | ||||| || Sbjct 362 CAACGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAAC 303 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || |||||||| | || |||||||| || |||||| Sbjct 302 ATCCAGAAGGAGTCTACTCTTCACTTGGTATTGCGTCTCCGTGGTGGA 255 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| | || |||||||| || ||||| |||||||| || Sbjct 1167 AATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATC 1108 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | || ||||| ||||| ||||| || ||||| || ||||| || Sbjct 1107 CGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCA 1048 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| |||| ||||| ||||| ||||| || || | || || || | || || || Sbjct 1047 ACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTACAA 988 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||| | || | ||||| || ||||| Sbjct 987 CATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGG 940 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || | || || || || || ||| | ||||||||| | Sbjct 938 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 879 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || ||||||||||| || ||||| ||||| || ||||| || Sbjct 878 GATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 819 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||| ||||| || || | ||||||| || || || | ||||||||| Sbjct 818 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 759 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||||||||| ||| |||| | || | || ||||| Sbjct 758 ATTCAAAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGG 712 Score = 138 bits (152), Expect = 1e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || || ||||| || ||||| | || ||||| | Sbjct 255 AATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATTACCTTGGANGTTGAACCTTC 196 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| || | |||||||| || || || ||||| || ||||| ||||| || Sbjct 195 AGATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCCCCAGATCA 136 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| | || || || || || ||| | ||||| | |||||| | | || || || Sbjct 135 GCAACGTTTGATCTTCGCCGGCAAACAATTGGAGGACGGACGTACCTTGTCCGATTACAA 76 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || |||||||| | || |||||||| || ||||| Sbjct 75 CATCCAAAAAGAGTCTACTCTTCACTTGGTATTGCGTCTCCGTGGTGG 28 >seq2732 Length=47336 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || ||||| || ||||| || ||||||||||||||| | Sbjct 1833 AATGCAAATATTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCTTC 1774 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| | || | ||||| |||||||| || ||||| |||||||| || || || Sbjct 1773 GGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGATCA 1714 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||||||||||| || |||||| | || |||| ||| || | || |||||||| Sbjct 1713 ACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTATAA 1654 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || || || || | ||| |||| | |||||| | ||||| Sbjct 1653 TATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGG 1606 >seq1128 Length=88325 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || |||||||| || || || | || |||||| | Sbjct 111 ATGCAAATCTTCGTGAAGACTCTCACCGGCAAAACAATCACCTTGGAAGTTGAGCCTTCG 170 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | || || ||||| || || ||||||||||| || ||||| || Sbjct 171 GATACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAGGAGGGAATCCCACCAGATCAA 230 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || || || |||||||| ||||||| ||||| | | ||||| ||| Sbjct 231 CAACGTTTGATCTTCGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAAT 290 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || || ||| | || | ||||||||||| || Sbjct 291 ATACAGAAGGAATCGACACTCCATTTGGTGCTACGTCTTCGCGGAGG 337 >seq291 Length=196152 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 80037 CGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGA 80096 ||| |||| ||| |||||||| |||||||| || |||||||||||| | || ||||| Sbjct 78010 CGTACGCAAATAATACATGCCAGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGA 77951 Query 80097 ACTGAGCTTCGCA-AGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGA 80155 | ||||||| || ||| |||| | ||| | ||||| | |||||| |||| || Sbjct 77950 AGTGAGCTTACCATAGT-TGGGCTCAGCCACGTGTATGTTGAACGACTGACTCTGATCGA 77892 Query 80156 TGAAAGCCCCACGATCTGCCGCCATTT 80182 |||| || ||||||||||| ||||||| Sbjct 77891 TGAATGCACCACGATCTGCAGCCATTT 77865 Score = 100 bits (110), Expect = 3e-16 Identities = 112/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 80037 CGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGA 80096 ||| |||| ||| |||||||| |||||||| || |||||||||||| | || ||||| Sbjct 85086 CGTACGCAAATAATACATGCCAGTCTTGAGACCTGCCTTCCAGCCGTAGAAATGTATAGA 85027 Query 80097 ACTGAGCTTCGCA-AGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGA 80155 | ||||||| || ||| |||| | ||| | ||||| | |||||| |||| || Sbjct 85026 AGTGAGCTTACCATAGT-TGGGCTCAGCCACGTGTATGTTGAACGACTGACTCTGATCGA 84968 Query 80156 TGAAAGCCCCACGATCTGCCGCCATTT 80182 |||| || ||||||||||| ||||||| Sbjct 84967 TGAATGCACCACGATCTGCAGCCATTT 84941 >seq127 Length=321973 Score = 82.4 bits (90), Expect = 9e-11 Identities = 181/267 (68%), Gaps = 11/267 (4%) Strand=Plus/Minus Query 24849 AACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTCG 24908 ||||| ||||| || || || ||||| || || || || ||||||| || || || Sbjct 250541 AACTATCGTGAAGCATATAATATGTATGCCTGTAATGGCATATTGTTCAATCACGAATCC 250482 Query 24909 GAGCGTCGGGGACCTGAA---TTTGTTACACGAAAGATTACTCTTG--GTATTGACCAT- 24962 ||||| || |||| || || ||||| || || || | | ||| || || Sbjct 250481 CCACGTCGTGG---TGAAAATTTCGTGACACGCAAAATAACGCGTTCCGTAGCGAAAATA 250425 Query 24963 -TGGATCAAGACAAGGGCACCTATTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGG 25021 | ||||| | | || | || | || |||| || || || | |||||||||||||| Sbjct 250424 TTTCATCAACA-ATTGGAATCTTTCGAATTGGGTAATCTTGACTCGAAACGTGATTGGGG 250366 Query 25022 GCATGCAGCCGACTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGA 25081 || ||| || ||||| || ||||||||| ||| | ||| | | ||||| | || Sbjct 250365 TCACGCAATGGATTACGTGGAGGCCATGTGGATGATGTTGCAATTGGAAAAGCCTGCTGA 250306 Query 25082 TTTTGTGATCGGCACCGGTCAGACGCA 25108 ||||||||| | ||||||| | ||||| Sbjct 250305 TTTTGTGATTGCCACCGGTGAAACGCA 250279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570082560995200