Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq749 127 1e-24 seq609 123 2e-23 seq1128 105 4e-18 seq2732 93.3 3e-14 >seq749 Length=113903 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || ||||| |||||||| ||||| ||||| || | || || Sbjct 493 AGACGCAATACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGGACAAGGTACGT 552 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| |||||||| || |||||||| ||||| || || || | |||||| Sbjct 553 CCGTCTTCCAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCCTCC 612 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||||| ||||||| | |||||| || || || |||| || Sbjct 613 TTGTC-CTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGT 671 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || || ||||| || || || ||||| Sbjct 672 AATTGTTTTACCCGTCAAAGTTTTAACGAAGATTTGCAT 710 Score = 111 bits (122), Expect = 1e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| || || |||||| || ||||| ||||| || || || || Sbjct 949 AGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGT 1008 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| ||||||||||||||||| |||||||| ||||| || || || | ||| || Sbjct 1009 CCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCT 1068 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| || | |||||| | ||| || || || || |||| || Sbjct 1069 TTGTCT-TGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGT 1127 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || || || ||||| || || ||||| ||| Sbjct 1128 GATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 1170 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||| |||||| ||||||||||| ||||| || || ||||| || | || || Sbjct 730 ACTAAATGTAGAGTGGATTCCTTTTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCC 789 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||||| || || || || ||||| ||||| || || || | ||| ||||| ||| || Sbjct 790 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT-TG 848 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| | ||| || | ||| || || ||| || |||| || || ||||| Sbjct 849 AATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTT 908 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| || |||||||||||| Sbjct 909 TCCCGTCAAAGTTTTGACGAAAATCTGCATG 939 >seq609 Length=128410 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||| ||||||||||| || ||||||||| ||||| || || || Sbjct 92970 CCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 92911 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||| ||||| || || ||||||||||| || || || Sbjct 92910 AAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGG 92851 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| | ||| || | || ||||| ||| || Sbjct 92850 ATACCCTCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGAC 92792 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || || ||||| ||||| ||||| || ||||||||||| ||| Sbjct 92791 CTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTTG 92740 >seq1128 Length=88325 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | |||||| | |||||||||||| || ||||| || || || || || | Sbjct 339 CGCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGG 280 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | | || || | || |||||||| || ||||| || || ||||| ||||| || || | Sbjct 279 ACAAAGTACGTCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTG 220 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||| ||| ||| ||| | ||| || | ||| || || ||| Sbjct 219 GGATTCCCTCCTTATCTTGGAT-TTTGGCTTTGACATTCTCAATGGTATCCGAAGGCTCA 161 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || ||||| ||||| | || ||||| || || ||||| Sbjct 160 ACTTCCAAGGTGATTGTTTTGCCGGTGAGAGTCTTCACGAAGATTTGCAT 111 >seq2732 Length=47336 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| ||||||||||| | || ||||| | || ||| || ||||| ||||| || | Sbjct 1604 CGCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAG 1663 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | ||| || | ||||| | ||| || |||||||| |||| ||||||||| || |||| Sbjct 1664 CCAATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCG 1723 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCC 34656 | | ||| ||||| ||| ||| ||| | ||||| | ||| || || ||| Sbjct 1724 GAATTCCTTCCTTATCT-TGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCA 1782 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || ||||| || | ||||| || || || ||||| Sbjct 1783 ACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCAT 1832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314607008886680