Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq749 127 1e-24
seq609 123 2e-23
seq1128 105 4e-18
seq2732 93.3 3e-14
>seq749
Length=113903
Score = 127 bits (140), Expect = 1e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||| ||||| || ||||| |||||||| ||||| ||||| || | || ||
Sbjct 493 AGACGCAATACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAATCGGACAAGGTACGT 552
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| | ||| |||||||| || |||||||| ||||| || || || | ||||||
Sbjct 553 CCGTCTTCCAATTGCTTACCGGCGAAGATTAAACGTTGTTGATCTGGAGGAATACCCTCC 612
Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| ||||| ||||||| | |||||| || || || |||| ||
Sbjct 613 TTGTC-CTGAATTTTTGCTTTAACGTTTTCAATTGTATCGGAAGGTTCAACCTCCAGAGT 671
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| |||||||| || || ||||| || || || |||||
Sbjct 672 AATTGTTTTACCCGTCAAAGTTTTAACGAAGATTTGCAT 710
Score = 111 bits (122), Expect = 1e-19
Identities = 160/223 (72%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||| || || |||||| || ||||| ||||| || || || ||
Sbjct 949 AGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAGAGTGCGT 1008
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| ||||||||||||||||| |||||||| ||||| || || || | ||| ||
Sbjct 1009 CCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCT 1068
Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| || | |||||| | ||| || || || || |||| ||
Sbjct 1069 TTGTCT-TGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGT 1127
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || || || || || ||||| || || ||||| |||
Sbjct 1128 GATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 1170
Score = 98.7 bits (108), Expect = 6e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
|| ||||| |||||| ||||||||||| ||||| || || ||||| || | || ||
Sbjct 730 ACTAAATGTAGAGTGGATTCCTTTTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCC 789
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
| ||||| || || || || ||||| ||||| || || || | ||| ||||| ||| ||
Sbjct 790 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT-TG 848
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
| ||| | ||| || | ||| || || ||| || |||| || || |||||
Sbjct 849 AATTTTAGCTTTGACATTCTCAATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTT 908
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || || ||||| || ||||||||||||
Sbjct 909 TCCCGTCAAAGTTTTGACGAAAATCTGCATG 939
>seq609
Length=128410
Score = 123 bits (136), Expect = 2e-23
Identities = 168/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||||| ||||||||||| || ||||||||| ||||| || || ||
Sbjct 92970 CCACCACGAAGACGCAGAACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAC 92911
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| | |||||| ||||| || || ||||||||||| || || ||
Sbjct 92910 AAGGTACGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGGGGG 92851
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658
| ||||| |||||| ||| ||| | ||| || | || ||||| ||| ||
Sbjct 92850 ATACCCTCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCGATGGTGTCAGAAGGCTCGAC 92792
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| | ||| || || ||||| ||||| ||||| || ||||||||||| |||
Sbjct 92791 CTCTAAGGTGATGGTCTTACCAGTTAAGGTTTTGACGAAAATCTGCATTTTG 92740
>seq1128
Length=88325
Score = 105 bits (116), Expect = 4e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | |||||| | |||||||||||| || ||||| || || || || || |
Sbjct 339 CGCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGG 280
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| | || || | || |||||||| || ||||| || || ||||| ||||| || || |
Sbjct 279 ACAAAGTACGTCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTG 220
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | ||||||||| ||| ||| ||| | ||| || | ||| || || |||
Sbjct 219 GGATTCCCTCCTTATCTTGGAT-TTTGGCTTTGACATTCTCAATGGTATCCGAAGGCTCA 161
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||||| ||| || ||||| ||||| | || ||||| || || |||||
Sbjct 160 ACTTCCAAGGTGATTGTTTTGCCGGTGAGAGTCTTCACGAAGATTTGCAT 111
>seq2732
Length=47336
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| ||||||||||| | || ||||| | || ||| || ||||| ||||| || |
Sbjct 1604 CGCCACCTCTAAGACGAAGTACTAAATGCAATGTAGACTCTTTCTGAATATTATAGTCAG 1663
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| ||| || | ||||| | ||| || |||||||| |||| ||||||||| || ||||
Sbjct 1664 CCAATGTGCGACCATCTTCCAATTGCTTTCCGGCAAAAATTAGACGCTGTTGATCAGGCG 1723
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCC 34656
| | ||| ||||| ||| ||| ||| | ||||| | ||| || || |||
Sbjct 1724 GAATTCCTTCCTTATCT-TGAATTTTGGCCTTAACATGTTCAATAGTATCCGAAGGCTCA 1782
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | || || || ||||| || | ||||| || || || |||||
Sbjct 1783 ACCTCAAGAGTGATGGTCTTACCCGTAAGGGTTTTTACGAATATTTGCAT 1832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314607008886680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |