Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq749 172 5e-38 seq609 167 2e-36 seq892 134 1e-26 seq2732 123 2e-23 seq31582 82.4 7e-11 >seq749 Length=113903 Score = 172 bits (190), Expect = 5e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||| |||| || || | |||||||| || || ||||| ||| Sbjct 710 ATGCAAATCTTCGTTAAAACTTTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCC 651 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| ||||||||| ||||| || || || || || |||||| Sbjct 650 GATACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAGGGTATTCCTCCAGATCAA 591 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | |||||| || |||||||||||| | ||| | |||||||||||| Sbjct 590 CAACGTTTAATCTTCGCCGGTAAGCAATTGGAAGACGGACGTACCTTGTCCGATTACAAC 531 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | || ||||| |||||| | || ||||| || Sbjct 530 ATCCAAAAGGAATCTACTCTTCACTTGGTATTGCGTCTCCGCGGTGGTAT 481 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| | || ||||| || || ||||| ||| Sbjct 1166 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAACCATCC 1107 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||||||||||||||| || || || |||||| Sbjct 1106 GATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCAA 1047 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||||| |||||| |||||||| | || | |||||||||||| Sbjct 1046 CAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGATTACAAC 987 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||||||||| | ||| | || |||||||| Sbjct 986 ATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGTCTACGTGGTGGCAT 937 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||| |||| || || | || ||| | || || || || || Sbjct 939 CATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTC 880 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| ||||||||||| || ||||| || || || ||||| Sbjct 879 CGATACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 820 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | ||| |||||||| ||||| || | || | ||||| || || Sbjct 819 ACAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAA 760 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || ||||||| ||| | || || || ||||| || Sbjct 759 TATTCAAAAGGAATCCACTCTACATTTAGTTCTACGCTTACGTGGTGGTAT 709 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || ||||| | ||||| | || || ||||| || Sbjct 254 ATGCAAATCTTCGTGAAGACCCTCACTGGCAAAACCATTACCTTGGANGTTGAACCTTCA 195 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || ||||| || |||||||| || || ||||| Sbjct 194 GATACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCCCCAGATCAG 135 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||||||||||||||| ||| | ||| | |||||||||||| Sbjct 134 CAACGTTTGATCTTCGCCGGCAAACAATTGGAGGACGGACGTACCTTGTCCGATTACAAC 75 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| || | || ||||| |||||| | || ||||| || Sbjct 74 ATCCAAAAAGAGTCTACTCTTCACTTGGTATTGCGTCTCCGTGGTGGTAT 25 >seq609 Length=128410 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| | || || ||| | || || | || || || || || Sbjct 92744 ATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCTTCT 92803 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| ||||| ||||||||||| || || || || |||||| Sbjct 92804 GACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCAGATCAA 92863 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| |||||||||||||| || ||| | ||||| |||||| Sbjct 92864 CAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAAC 92923 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | ||||||||| ||||| | || ||||| || Sbjct 92924 ATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGGTAT 92973 >seq892 Length=101496 Score = 134 bits (148), Expect = 1e-26 Identities = 136/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 135476 TGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATG 135535 |||||||| ||||||| ||| | || |||||||||||||| || ||| |||| ||| Sbjct 64710 TGGAACGCAGCACAACTGCAATTGTTACGTGAAGGCAAAATGCATGGTTTTCTGCGTATG 64769 Query 135536 TATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCA 135595 |||||||||||||||||| |||| |||||| | | |||| | || || || |||| Sbjct 64770 TATTGGGCAAAAAAGATACTGGAGTGGTCTTCTACACCTGATGCTGCTTTAGAAACCGCA 64829 Query 135596 ATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || ||||| |||||| | || ||||| ||||| | ||| |||| ||||| || ||| Sbjct 64830 ATTTTTTTGAATGATAAATATAGTTTGGATGGTCTAGATCCAAACGGCTATGTTGGT 64886 Score = 104 bits (114), Expect = 2e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 135503 CGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGG 135562 || ||||||||||||||||||||| | || | ||||||||| ||||||||| | |||||| Sbjct 69529 CGTGAAGGCAAAATGCACGGATTTCTTCGTAAGTATTGGGCCAAAAAGATACTTGAATGG 69588 Query 135563 TCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTA 135622 || || || | ||||||||| || ||||| | ||| || || | || |||||| Sbjct 69589 TCCAACTCACCAGAAGAGGCGCTGGAAATTGCAATTTATTTAAACGACAAATATAGTTTA 69648 Query 135623 GATGGACGCGATTCAAATGGCTACGTAGGT 135652 ||||| | || || || || || || ||| Sbjct 69649 GATGGCAGAGACTCCAACGGTTATGTGGGT 69678 >seq2732 Length=47336 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || ||||| ||||| |||||||| || || || ||| | || |||||||| || || || Sbjct 1835 GCAATGCAAATATTCGTAAAAACCCTTACGGGTAAGACCATCACTCTTGAGGTTGAGCCT 1776 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || || | ||||| || || ||||||||||| || ||||| || || || ||| Sbjct 1775 TCGGATACTATTGAACATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCGCCTGAT 1716 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||||||| |||| | ||||| || ||||||||||| || || | | || || Sbjct 1715 CAACAGCGTCTAATTTTTGCCGGAAAGCAATTGGAAGATGGTCGCACATTGGCTGACTAT 1656 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || ||||| || ||||| || || ||||| || | ||| | | |||||| Sbjct 1655 AATATTCAGAAAGAGTCTACATTGCATTTAGTACTTCGTCTTAGAGGTGGC 1605 >seq31582 Length=1007 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 27097 CACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT 27156 |||| |||||||| |||||||| | |||||| || |||||||||||| | ||| | | Sbjct 675 CACCAGATCAACAACGTTTAATCTTCGCCGGTAAGCAATTGGAAGACGGACGTACCTTGT 616 Query 27157 CCGATTACAACATTCAAAAGGAGTC 27181 |||||||||||| |||||||| || Sbjct 615 TCGATTACAACATCCAAAAGGAATC 591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434744650099200