Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq2983 136 8e-28 >seq2983 Length=44036 Score = 136 bits (150), Expect = 8e-28 Identities = 282/413 (68%), Gaps = 10/413 (2%) Strand=Plus/Plus Query 27562 TGACTGCCTATTACAACGAAATCGATCCCTTCGCCGCGCAATGGCTGCGCAACCTGATCG 27621 |||| ||||| |||||||| |||| || ||||| | ||||| | |||||| | | Sbjct 42642 TGACAGCCTACTACAACGAGTTCGACCCGTTCGCGGTTGAATGGTTAACCAACCTCAAC- 42700 Query 27622 ACGCTGGGCAC-ATCGCCCCGGGCGTCGTTGACACTCGCTCAATTGAGGAAGTAACCGCA 27680 || | |||| | || || ||||| | | ||| | || || ||||| ||||| | Sbjct 42701 ACCCGGGGCGCGATTGCTCCGGGATTTATCGACCCCCGTAGTATCGAGGAGCTAACCCCC 42760 Query 27681 AATGACCTTAAAGGATTCACGCAATGCCACTTCTTTGCCGGGATCGGTGTGTGGTCTTAC 27740 ||| |||| | ||| ||| ||| | || ||||||||||| || ||||| ||| Sbjct 42761 TTTGAGCTTACCTATTACACCCAAGTACACCTATTCGCCGGGATCGGCGTCTGGTCCTAC 42820 Query 27741 GCCCTGCGCCGCGCAGGATGGCCCGATGATCGCCCCGTCTGGACAGGTTCATGCCCCTGC 27800 ||||||||| || ||||||| || || |||||||||||||| | || ||||| ||| Sbjct 42821 GCCCTGCGCGCTGCCGGATGGCGTGACGACCGCCCCGTCTGGACCTGCTCCTGCCCGTGC 42880 Query 27801 CAGCCTTTCAGCGCCTGCGGAAAGCGACAGGGATTTGACGATCCCCGCCATCATTGGCCC 27860 ||||| |||||| |||| || | | ||||| ||||| || || || | |||||| Sbjct 42881 CAGCCGTTCAGCAGTAGCGGCAAAGGGGACGGATTCGACGACCCGCGACACCTCTGGCCC 42940 Query 27861 TCATG-GGGTCACCTTATTAAGGTGTGTGCGCCTCACGTTGTCTTTGGGGAACAGGTTGC 27919 || | | ||| || | | | | ||| |||| | ||||| ||||||||| Sbjct 42941 -CACGCAAAACGCCTCATCGAAGAGCGCCGCCCTTTCGTTATTTTTGGCGAACAGGTT-- 42997 Query 27920 AAGCAAAGACGGC---CTCGCATGGCTCGACGCTGTACAGGCTGATCTGGAAA 27969 ||| || ||| |||||| ||||| |||||| |||| ||||||| Sbjct 42998 -AGCGCAGGTGGCGCAAATGCATGGTTCGACCTTGTACAAACTGACCTGGAAA 43049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107066550139920