Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq749 116 3e-21 seq609 104 2e-17 >seq749 Length=113903 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || ||||| |||| || |||||||| || || || ||||| ||||||||||| Sbjct 161 GATAAGGAAGGCATTCCCCCAGATCAGCAACGTTTGATCTTCGCCGGCAAACAATTGGAG 102 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | |||||||||||||||||||||||||||| ||| | || ||||| ||| Sbjct 101 GACGGACGTACCTTGTCCGATTACAACATCCAAAAAGAGTCTACTCTTCACTTGGTATTG 42 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 41 CGTCTCCGTGGTGG 28 Score = 114 bits (126), Expect = 9e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||| | || || ||| ||||| | || || ||| || Sbjct 710 ATGCAAATCTTCGTTAAAACTTTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCC 651 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | || || | || |||||| | || ||||| || ||| |||| || Sbjct 650 GATACAATTGAAAA-CGTTAAAGCAAAAATTCAG--GACAAGGAGGGTATTCCTCCAGAT 594 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||| || ||||| || |||||||| |||| ||| | ||||||||||||| Sbjct 593 CAACAACGTTTAATCTTCGCCGGTAAGCAATTGGAAGACGGACGTACCTTGTCCGATTAC 534 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| | || ||||| |||||| | || || || Sbjct 533 AACATCCAAAAGGAATCTACTCTTCACTTGGTATTGCGTCTCCGCGGTGG 484 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||||||||| | || || || ||||| ||||| |||||||| |||||| |||| Sbjct 1073 GACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAA 1014 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||||||||||||||||| || ||| || | ||||||||| | Sbjct 1013 GACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCATTTGGTTCTT 954 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 953 CGTCTACGTGGTGGC 939 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || || ||| |||| || || ||||| || || || ||||| || |||||||| Sbjct 389 GATAAGGAGGGTATTCCTCCAGATCAACAACGTTTGATCTTCGCCGGTAAGCAATTGGAG 330 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| |||||||| ||||||||||| || ||| ||| | || ||||| ||| Sbjct 329 GACGGACGCACATTGTCCGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTATTG 270 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 269 CGTCTCCGTGGTGG 256 >seq609 Length=128410 Score = 104 bits (114), Expect = 2e-17 Identities = 165/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 27784 AGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA 27843 || |||||||| ||||| || ||||| | ||||| || || || | || ||||| Sbjct 92738 AGCAAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAG 92797 Query 27844 AGCACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 | ||| || | ||| |||||| ||||| |||||||| ||| | || Sbjct 92798 CCTTCTGACACCATCGAAAAT--GTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCC 92855 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || || || || || || || ||||||||||||||||| || | || | |||||||| Sbjct 92856 CAGATCAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTGTCCG 92915 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||||||||| ||| || | ||||||||| ||||| | ||||| || Sbjct 92916 ACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGG 92970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355723787146920