Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21]
31,960 sequences; 519,005,690 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq749 116 3e-21
seq609 104 2e-17
>seq749
Length=113903
Score = 116 bits (128), Expect = 3e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| || ||||| |||| || |||||||| || || || ||||| |||||||||||
Sbjct 161 GATAAGGAAGGCATTCCCCCAGATCAGCAACGTTTGATCTTCGCCGGCAAACAATTGGAG 102
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||| | |||||||||||||||||||||||||||| ||| | || ||||| |||
Sbjct 101 GACGGACGTACCTTGTCCGATTACAACATCCAAAAAGAGTCTACTCTTCACTTGGTATTG 42
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 41 CGTCTCCGTGGTGG 28
Score = 114 bits (126), Expect = 9e-21
Identities = 166/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || || |||||| | || || ||| ||||| | || || ||| ||
Sbjct 710 ATGCAAATCTTCGTTAAAACTTTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCC 651
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|| | || | || || | || |||||| | || ||||| || ||| |||| ||
Sbjct 650 GATACAATTGAAAA-CGTTAAAGCAAAAATTCAG--GACAAGGAGGGTATTCCTCCAGAT 594
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| ||||| ||||| || ||||| || |||||||| |||| ||| | |||||||||||||
Sbjct 593 CAACAACGTTTAATCTTCGCCGGTAAGCAATTGGAAGACGGACGTACCTTGTCCGATTAC 534
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||| || ||| | || ||||| |||||| | || || ||
Sbjct 533 AACATCCAAAAGGAATCTACTCTTCACTTGGTATTGCGTCTCCGCGGTGG 484
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||||||||| | || || || ||||| ||||| |||||||| |||||| ||||
Sbjct 1073 GACAAAGAAGGAATCCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAA 1014
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| ||||||||||||||||||| || ||| || | ||||||||| |
Sbjct 1013 GACGGACGCACTCTGTCCGATTACAACATCCAGAAGGAGTCTACACTTCATTTGGTTCTT 954
Query 28003 CGTTTGCGTGGCGGC 28017
||| | ||||| |||
Sbjct 953 CGTCTACGTGGTGGC 939
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| || || ||| |||| || || ||||| || || || ||||| || ||||||||
Sbjct 389 GATAAGGAGGGTATTCCTCCAGATCAACAACGTTTGATCTTCGCCGGTAAGCAATTGGAG 330
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| |||||||| ||||||||||| || ||| ||| | || ||||| |||
Sbjct 329 GACGGACGCACATTGTCCGACTACAACATCCAGAAGGAGTCTACTCTTCACTTGGTATTG 270
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 269 CGTCTCCGTGGTGG 256
>seq609
Length=128410
Score = 104 bits (114), Expect = 2e-17
Identities = 165/235 (70%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 27784 AGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA 27843
|| |||||||| ||||| || ||||| | ||||| || || || | || |||||
Sbjct 92738 AGCAAAATGCAGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAG 92797
Query 27844 AGCACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901
| ||| || | ||| |||||| ||||| |||||||| ||| | ||
Sbjct 92798 CCTTCTGACACCATCGAAAAT--GTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCC 92855
Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961
|| || || || || || || ||||||||||||||||| || | || | ||||||||
Sbjct 92856 CAGATCAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGTACCTTGTCCG 92915
Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| |||||||||||||| ||| || | ||||||||| ||||| | ||||| ||
Sbjct 92916 ACTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTGCGTCTTCGTGGTGG 92970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355723787146920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |