Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bactrocera_20tryoni_20[genbank_20GCA_5F000695345.1_202014-05-21] 31,960 sequences; 519,005,690 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq749 145 2e-29 seq609 136 1e-26 seq1128 129 1e-24 >seq749 Length=113903 Score = 145 bits (160), Expect = 2e-29 Identities = 162/216 (75%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| |||||||| || | || || || || ||||| || ||||| ||| Sbjct 1169 AAAATGC---AAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGAGGTTGAA 1113 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| |||||||| ||||||||||||||||| || Sbjct 1112 CCATCCGATACTATTGAAAATGTTAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCA 1053 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | ||||| ||||| ||||| || ||||| ||| | ||||| ||||| Sbjct 1052 GATCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGCACTCTGTCCGAT 993 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || ||| |||| || || || ||||| ||| | ||| Sbjct 992 TACAACATCCAGAAGGAGTCTACACTTCATTTGGTT 957 Score = 138 bits (152), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || ||||| || ||| | || || ||| ||||| Sbjct 251 CAAATCTTCGTGAAGACCCTCACTGGCAAAACCATTACCTTGGANGTTGAACCTTCAGAT 192 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| || || || ||||| || || || || |||||| Sbjct 191 ACCATTGAGAACGTTAAGGCTAAGATCCAAGATAAGGAAGGCATTCCCCCAGATCAGCAA 132 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| ||||| | || || ||| | || |||| ||||||| ||| | Sbjct 131 CGTTTGATCTTCGCCGGCAAACAATTGGAGGACGGACGTAC-CTTGTCCGATTACAACAT 73 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||||||| || || || || | || ||| | ||| Sbjct 72 CCAAAAAGAGTCTACTCTTCACTTGGTATTGCGTCTC 36 Score = 136 bits (150), Expect = 1e-26 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || ||||| || || || ||||| ||| || || Sbjct 707 CAAATCTTCGTTAAAACTTTGACGGGTAAAACAATTACTCTGGAGGTTGAACCTTCCGAT 648 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| ||| ||||||||||| || || || ||||| || || ||| Sbjct 647 ACAATTGAAAACGTTAAAGCAAAAATTCAGGACAAGGAGGGTATTCCTCCAGATCAACAA 588 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| || || | ||||| ||| | || |||| ||||||| ||| | Sbjct 587 CGTTTAATCTTCGCCGGTAAGCAATTGGAAGACGGACGTAC-CTTGTCCGATTACAACAT 529 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 |||||| ||||| || || || | || ||| | ||| Sbjct 528 CCAAAAGGAATCTACTCTTCACTTGGTATTGCGTCTC 492 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || |||||||| ||||| | ||||| || || || Sbjct 935 CAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 876 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| || ||||| || || ||||||||||| || || || ||| Sbjct 875 ACCATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAA 816 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || |||||| | || |||||| | || || |||| ||||| | Sbjct 815 CGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAATATT 756 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || ||| | ||| Sbjct 755 CAAAAGGAATCCACTCTACATTTAGTT 729 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || ||||| ||||| | || || || ||||| Sbjct 479 CAAATCTTCGTAAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTTGAGCCTTCAGAT 420 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| || || || || || || ||||| || || ||| Sbjct 419 ACCATTGAGAACGTAAAGGCCAAGATCCAAGATAAGGAGGGTATTCCTCCAGATCAACAA 360 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || || | || || ||| | || | |||| || ||| || Sbjct 359 CGTTTGATCTTCGCCGGTAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAACATC 300 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || | || ||| | ||| Sbjct 299 CAGAAGGAGTCTACTCTTCACTTGGTATTGCGTCTC 264 >seq609 Length=128410 Score = 136 bits (150), Expect = 1e-26 Identities = 164/220 (75%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| ||||| | || || || || |||||| | ||||| || Sbjct 92741 AAAATGC---AGATTTTCGTCAAAACCTTAACTGGTAAGACCATCACCTTAGAGGTCGAG 92797 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||||||||| || |||||| || || || |||||||| || ||||| || Sbjct 92798 CCTTCTGACACCATCGAAAATGTCAAAGCTAAAATCCAAGACAAAGAGGGTATCCCCCCA 92857 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 || || || || | ||||||||||||||||| | |||||||| | || |||| |||| Sbjct 92858 GATCAACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGTAC-CTTGTCCGA 92916 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||| ||||||| || ||||| || ||| | ||| || Sbjct 92917 CTACAACATCCAAAAGGAGTCAACCCTCCATTTGGTTCTG 92956 >seq1128 Length=88325 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| |||||||| || ||||| |||||| | || || || || || Sbjct 114 CAAATCTTCGTGAAGACTCTCACCGGCAAAACAATCACCTTGGAAGTTGAGCCTTCGGAT 173 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| || || || || || || |||||||| || || || ||| Sbjct 174 ACCATTGAGAATGTCAAAGCCAAAATCCAAGATAAGGAGGGAATCCCACCAGATCAACAA 233 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || || || || |||||| | ||| | |||| || || | Sbjct 234 CGTTTGATCTTCGCCGGCAAGCAACTTGAGGATGGACGTACTTTGTCCGACTACAATATA 293 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || ||||| ||||| ||| Sbjct 294 CAGAAGGAATCGACACTCCAT 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203238287120240