Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq347318 100 3e-16 seq194953 84.2 3e-11 >seq347318 Length=1073 Score = 100 bits (110), Expect = 3e-16 Identities = 284/434 (65%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 54179 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 54238 |||||||| ||||| || | || | |||||||| || || |||| | ||| || | | Sbjct 1069 TTGTTTCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAGACTCGGAGCATGGGCACA 1010 Query 54239 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTAC 54296 | ||||||||| |||||||| || | || || | ||| |||||| || | | Sbjct 1009 AGGCCATTGGATATTCCATTGGTGCCAGCAATGTATGTGCCAGAGGCACGGATGCAATGG 950 Query 54297 TAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 ||||| || || || ||||| || ||||| | ||||| | || | || | Sbjct 949 ACATTGACG--CCAATGCCACCTGCAGACTTGGAGATGAGGGCGCACTGCTTCAGAGTGT 892 Query 54357 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-- 54414 | ||||||||||| || || |||||| ||||| | || || || || || || | ||| Sbjct 891 CGTAGATGCCCTCAATGCTGTCATCCTTCATGGTTAGCAGGAAGCAACTTGAGAGTTGAG 832 Query 54415 --GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472 ||||| || | || || || | ||| || || || || || || | ||| Sbjct 831 GTTTGACG----GTGGCAGCGTTGAACAGGGTGGGGGAGGCATGAGTGAAATAGCGTTCC 776 Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 54532 || || |||||||| || ||| | | || || ||| ||| || || || || Sbjct 775 GACAGCAGATTGTAGGTGATGATGGTGGCATCAATGTCCTCACCATGGATACCAACAGCA 716 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 || | ||| | ||||||||| || | || | | || |||| || ||||||||| Sbjct 715 ACTCTCATCAGCATGTGCTGCGGGCGCTCGGCCACTTTATTGTCAATGCGCAGCAAGTAT 656 Query 54593 GATTTTTCCAAAGT 54606 ||| ||||| ||| Sbjct 655 GATCGTTCCAGAGT 642 >seq194953 Length=429 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||| | |||||| || ||||| |||||||| | || | ||| | Sbjct 139 CCTCATCTCTGGAAATAAGCTCGTTGCTGAAGGTGAGACCGGGCATCAAACCTCTCTTCT 80 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || ||||||||||| || || || ||||| ||||| ||||| ||||||| Sbjct 79 TCAGCCAGAAAATGGACGCAAAGCTGCCTGAGAAAAAAATCCCTTCGACTGCTGCAAAGG 20 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 19 CAACCACTCTCTCGCC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590887581265200