Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq159778 113 4e-20 seq41981 109 5e-19 seq315868 104 2e-17 seq41980 104 2e-17 >seq159778 Length=363 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || || ||||| | || |||| ||| | ||||||||| ||||| ||||||||||| Sbjct 41 TTGCCACCACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCA 100 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | ||| || | | ||||| | ||| ||||| ||| | || || | ||||||||| Sbjct 101 GACAGAGTACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGA 160 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | |||||||||||| |||||| ||||| | | | || ||| |||||| Sbjct 161 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCG 220 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || ||||| || || ||||| Sbjct 221 ACCTCCAATGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq41981 Length=230 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 20981 GGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGC 21040 ||| ||||| || ||||| ||||| | |||||| || | || |||||||| ||||| || Sbjct 230 GGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGC 171 Query 21041 ATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC 21100 | |||| || | ||||||||| || | |||||| ||||| |||||| || || Sbjct 170 AAAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAAC 111 Query 21101 CTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTT 21160 | | | ||| || |||||| |||| || |||||||||||||| || || || Sbjct 110 ATTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTT 51 Query 21161 GACAAATATTTGCAT 21175 ||||| |||||||| Sbjct 50 CACAAAAATTTGCAT 36 >seq315868 Length=823 Score = 104 bits (114), Expect = 2e-17 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| | ||||||||||| || | || |||||||| |||||||||||||| | | Sbjct 289 CCCCTC--AACCTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGAGA 346 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || ||||||| ||||| || || ||| | || || | |||||| || || | Sbjct 347 GAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGA 406 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 || |||||||| |||||| || || | | | || || |||||| || Sbjct 407 TTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACTT 466 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | || |||||||| || || | ||||||||||| |||||||| Sbjct 467 CAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | || |||| || | ||||| ||||| || ||||| ||||||| Sbjct 56 TTCCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCG 115 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || ||||||| ||||| || || ||| | || | | |||||| || | Sbjct 116 AAAGGGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAG 175 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| || || |||||| | | | || || |||||| Sbjct 176 GGATACCTTCCTTGTCCTGAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGA 235 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||| ||||| || | || || || || || ||||| Sbjct 236 CCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 >seq41980 Length=230 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 20981 GGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGC 21040 ||| ||||| || ||||| ||||| | |||||| || | || |||||||| ||||| || Sbjct 230 GGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGC 171 Query 21041 ATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCAC 21100 |||| || | ||||||||| || | |||||||||||| |||||| || || Sbjct 170 GAAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAAC 111 Query 21101 CTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTT 21160 | | | ||| || |||||| |||| || ||||||||||| || || || || Sbjct 110 GTTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTT 51 Query 21161 GACAAATATTTGCAT 21175 ||||| |||||||| Sbjct 50 CACAAAAATTTGCAT 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420294014260340