Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq41980 118 1e-21 seq41981 114 1e-20 seq6449 114 1e-20 seq315868 109 6e-19 seq168520 109 6e-19 seq75430 107 2e-18 seq6450 105 7e-18 seq194953 98.7 1e-15 >seq41980 Length=230 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| |||||||| | || || || || || Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| || |||||||| | ||||| Sbjct 96 GACACTATTGAGAACGTT-AAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCA 154 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 155 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 214 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 215 CATCCAGAAGGA 226 >seq41981 Length=230 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| |||||||| | || || || || || Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || || | |||||||| |||||||| | |||||| Sbjct 96 GACACTATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCCGACCAG 155 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | || ||||| |||||||| || | |||||||| |||||||||| Sbjct 156 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 215 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 216 ATCCAGAAGGA 226 >seq6449 Length=203 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||| ||||| || |||||| || || || || || ||||||||||| ||| | Sbjct 6 CACGTGCTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAGAGA 65 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||||| || |||| || |||| ||||| ||||| ||||||||||| Sbjct 66 TTCAGCCAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATC 125 Query 116873 GAGAACGTGCACTCGGAAATGTA 116895 || ||| | ||||| |||||||| Sbjct 126 GAAAACATCCACTCTGAAATGTA 148 >seq315868 Length=823 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||||||||||||| | || ||||| || | Sbjct 284 ATGCAGATCTTCGTTAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGCCCTCG 225 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||||| ||||| || || ||||| | || || Sbjct 224 GACACAATTGAGAACG-TGAAAGCCAAAATTCAGGACAAGGAAGGTATCCCTCCCGATCA 166 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || ||||| || |||| || ||||| |||||||| Sbjct 165 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTTTCGGACTACAA 106 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 105 CATCCAGAAGGAATCCACCCTCCA 82 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || ||||| | || ||||| | | Sbjct 740 ATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACTATCACTTTGGAGGTCGAGCCTTCT 681 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || |||| ||||| ||||||||||| | || ||| Sbjct 680 GACACCATTGAAAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 621 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||| |||| || | || || || |||||||||| Sbjct 620 CAGCGTCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTGTCCGACTACAAC 561 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| |||| || || Sbjct 560 ATTCAGAAGGAGTCCACCCTTCA 538 >seq168520 Length=216 Score = 109 bits (120), Expect = 6e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| |||||||| || |||||||| | || ||||| | | Sbjct 196 ATGCAGATCTTCGTAAAAACCCTCACGGGGAAGACCATCACACTTGAGGTCGAGCCTTCA 137 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || || | ||||| || ||||||||| | || ||| Sbjct 136 GACACGATCGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAG 77 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||||| || || | ||||| ||| ||| |||||| Sbjct 76 CAGCGCCTTATTTTCGCCGGCAAGCAGCTAGAGGATGGACGCACTCTCTCCGATTACAAC 17 Query 40870 ATCCAGAA 40877 || ||||| Sbjct 16 ATTCAGAA 9 >seq75430 Length=261 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || |||||||| | || || || || | Sbjct 5 AATGCAGATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTTTGGAGGTTGAGCCCTC 64 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| |||||| || || | ||||| ||||| |||||| | |||| Sbjct 65 AGATACCATCGAGAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACC 123 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || || | || ||||| ||||| || || | |||||||| || |||| Sbjct 124 AGCAGCGTCTTATTTTTGCAGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGATTACA 183 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||| ||| | || || ||||| || Sbjct 184 ACATCCAGAAAGAGTCAACCCTCCATCTTGT 214 >seq6450 Length=203 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||| ||||| || |||||| || || || || || ||||||||||| || | Sbjct 6 CACGTGCTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAAAGA 65 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||||| || |||| || |||| ||||| ||||| ||||||||||| Sbjct 66 TTCAGCCAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATC 125 Query 116873 GAGAACGTGCACTCGGAAATGTA 116895 || ||| | ||||| || ||||| Sbjct 126 GAAAACATCCACTCTGAGATGTA 148 >seq194953 Length=429 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 ||||||||| | |||| ||||| || || ||||| || | || || || ||||| || Sbjct 1 TTCGGCGAGAGAGTGGTTGCCTTTGCAGCAGTCGAAGGGATTTTTTTCTCAGGCAGCTTT 60 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 || |||| || ||||| ||||| | || | |||||||| || || |||||||||||| Sbjct 61 GCGTCCATTTTCTGGCTGAAGAAGAGAGGTTTGATGCCCGGTCTCACCTTCAGCAACGAG 120 Query 117149 CTCATCTCCAGGGACGAGG 117167 || || ||||| || |||| Sbjct 121 CTTATTTCCAGAGATGAGG 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512759897752400