Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq315868 138 1e-27 seq159778 122 8e-23 seq168520 111 1e-19 seq41980 107 2e-18 seq41981 102 7e-17 seq5983 95.1 1e-14 seq75430 93.3 4e-14 >seq315868 Length=823 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | || || | ||||| ||||| ||| ||||| || |||||||| || || Sbjct 284 TACCTCCCCTCAACCTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTG 343 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| ||||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 344 AGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAG 403 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| || || ||||| | ||| | ||||| | | ||| | Sbjct 404 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAA 463 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || || || ||||| ||||| || ||||| Sbjct 464 CTTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 Score = 138 bits (152), Expect = 1e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || ||||||||||| ||| || ||| || ||| || Sbjct 531 CACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCTTC 590 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| | || |||||||||||||||||||| |||||||||||||| Sbjct 591 CAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTG 650 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | ||| | |||||| | ||||||||| | || | || || Sbjct 651 AATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACCTCCAAAGTGATAGTCTT 710 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || |||||||| || || || ||||||||| || Sbjct 711 TCCAGTCAGAGTCTTAACGAAGATCTGCATGCCT 744 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || |||||||||| || || || || || |||||||| || Sbjct 58 CCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 117 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || ||||| ||||| || ||||| |||| | ||||||||||||||||| Sbjct 118 AGGGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGG 177 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || |||||||| |||||| ||| || | || | ||||||| | ||||||| Sbjct 178 ATACCTTCCTTGTCCTGAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGACC 237 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | |||||||| |||||||| || || || |||||||| Sbjct 238 TCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 >seq159778 Length=363 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| || ||||||||||| ||||| || || || ||| || |||||| Sbjct 62 ACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGACAGAGTACGACCATCCTCT 121 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || ||||| |||||||||||||||| |||||||| ||||| |||||||| Sbjct 122 AACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 181 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | | ||||||||| | || | || ||| Sbjct 182 ATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACCTCCAATGTGATGGTCTTG 241 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || |||||||||||| Sbjct 242 CCTGTGAGGGTCTTGACGAAAATCTGCATG 271 >seq168520 Length=216 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| ||||||||||||||| | |||||| |||||| ||||| || || ||| | | Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | || ||||||||||| || || ||||| |||||||| || || || || | || Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| ||||| | ||||||||| | || | || || || || || |||||||| | Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 118729 AAATCTGCATG 118739 | ||||||||| Sbjct 187 AGATCTGCATG 197 >seq41980 Length=230 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 || || || || |||||||| ||| || ||||| ||| || ||||| || || ||| Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCG 170 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | |||||||||||||| |||||||| ||||| |||||||| || || ||||| Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAACG 110 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || | ||||| | | ||| ||||| | || | || ||||| |||| ||| || Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTC 50 Query 118725 ACAAAAATCTGCAT 118738 |||||||| ||||| Sbjct 49 ACAAAAATTTGCAT 36 >seq41981 Length=230 Score = 102 bits (112), Expect = 7e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 || || || || |||||||| ||| || ||||| ||| || ||||| || || || Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 170 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | |||||||||||||| |||||||| ||||| || ||||| || || ||||| Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAACA 110 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || | ||||| | | ||| ||||| | || | || |||||||||| ||| || Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTC 50 Query 118725 ACAAAAATCTGCAT 118738 |||||||| ||||| Sbjct 49 ACAAAAATTTGCAT 36 >seq5983 Length=204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| ||||||||||| || || || || ||||||||||| ||||| || || | Sbjct 198 AGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCTTCACGT 139 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 |||| |||||| | | ||||||||| | ||| | || || || |||||||| |||| Sbjct 138 TCTCGATGGTGTCTGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCAGTCAGAGTCTTTA 79 Query 118726 CAAAAATCTGCATGGCT 118742 |||| ||||||||| || Sbjct 78 CAAAGATCTGCATGCCT 62 >seq75430 Length=261 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || |||||||| || ||||||||||| || ||||| |||||| | Sbjct 213 CAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGGCCATCCTCAA 154 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || | || ||||||||||| || || || || ||||||||||| | Sbjct 153 GCTGCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGA 94 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | |||| ||| || | | ||| ||||| | || | || || | Sbjct 93 TCTTAGCCTTGACGTTCTCGATGGTATCTGAGGGCTCAACCTCCAAAGTGATGGTCTTTC 34 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || || |||||||| Sbjct 33 CAGTAAGGGTCTTAACGAAGATCTGCAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431811362130580