Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq347318 145 7e-30 seq159778 132 4e-26 seq315868 131 1e-25 seq41980 122 8e-23 seq41981 109 5e-19 seq6450 96.9 3e-15 seq6449 96.9 3e-15 seq381734 95.1 1e-14 seq194953 89.7 5e-13 seq168520 87.8 2e-12 seq5983 82.4 7e-11 >seq347318 Length=1073 Score = 145 bits (160), Expect = 7e-30 Identities = 265/388 (68%), Gaps = 0/388 (0%) Strand=Plus/Minus Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| || || ||||| || || || ||||| ||||||||||| |||| ||||| ||||| Sbjct 1070 CTTGTTTCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAGACTCGGAGCATGGGCAC 1011 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 || || ||||| || ||| || | | || || || | | || Sbjct 1010 AAGGCCATTGGATATTCCATTGGTGCCAGCAATGTATGTGCCAGAGGCACGGATGCAATG 951 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 || | || || ||||| || | || || || || | ||||| || ||||||||||| Sbjct 950 GACATTGACGCCAATGCCACCTGCAGACTTGGAGATGAGGGCGCACTGCTTCAGAGTGTC 891 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGC 23733 |||||||||||| |||||||| || || | | | || ||| || || | ||| | Sbjct 890 GTAGATGCCCTCAATGCTGTCATCCTTCATGGTTAGCAGGAAGCAACTTGAGAGTTGAGG 831 Query 23734 TTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT 23793 |||| || || || |||||| || ||| ||| || || || || | | ||||| Sbjct 830 TTTGACGGTGGCAGCGTTGAACAGGGTGGGGGAGGCATGAGTGAAATAGCGTTCCGACAG 771 Query 23794 TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCG 23853 |||||||| ||| ||||| ||||||||||||||| || || ||||| | || || | Sbjct 770 CAGATTGTAGGTGATGATGGTGGCATCAATGTCCTCACCATGGATACCAACAGCAACTCT 711 Query 23854 CATCATCATGTATTGAGGTCTCTCGACC 23881 ||||| ||||| || || | |||| || Sbjct 710 CATCAGCATGTGCTGCGGGCGCTCGGCC 683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24089 AAAGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCCGCAAGCAACGAA 24148 |||| | ||| ||||||||||||| ||| || ||||| | ||| || ||||||| | | Sbjct 259 AAAGTCTTTTTGGTCTCCTTGTGCAGATTGGATACGGCGATTCTTGCAGCAAGCACTGCA 200 Query 24149 TAGTCGGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGCGATTAGATTGTCCAATTCA 24208 || || | ||| | | ||||||||| ||||| ||||| ||| | ||||| | ||| Sbjct 199 TAATCAGGATGCTTGGTGGTCATGGTGGCTGCTGTCTCAGCGGCCAAGTTGTCAAGCTCA 140 Query 24209 GCGGTGGTCACGCCCGAATAGATTCC 24234 | ||||| || || | ||| | ||| Sbjct 139 ACAGTGGTGACTCCAGGATAAAGTCC 114 >seq159778 Length=363 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || |||||||| || ||||| | || || || || || Sbjct 271 CATGCAGATTTTCGTCAAGACCCTCACAGGCAAGACCATCACATTGGAGGTCGAGCCCTC 212 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || |||||||| Sbjct 211 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 152 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||||| || || | ||| || || ||||| Sbjct 151 GCAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAGGATGGTCGTACTCTGTCTGACTATAA 92 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| |||||||| || ||||| |||||||| || Sbjct 91 CATCCAAAAAGAGTCCACTCTCCATCTGGTCCT 59 >seq315868 Length=823 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||||||||| || || || ||||| | || || || || || Sbjct 741 CATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACTATCACTTTGGAGGTCGAGCCTTC 682 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| ||||| | || ||||||||| ||| | || ||||| || Sbjct 681 TGACACCATTGAAAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCA 622 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||||||||| ||||||||||| | ||| || ||| || || Sbjct 621 GCAGCGTCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTGTCCGACTACAA 562 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || || || || ||||| |||| || | ||| | || |||| Sbjct 561 CATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGTA 512 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || || ||||| || || ||||| | || ||||| || || Sbjct 512 ATGCAAATCTTTGTCAAAACCCTCACAGGAAAGACCATCACACTTGAAGTTGAGCCCTCA 453 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | || |||||||| || | || ||||| ||| Sbjct 452 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGATCAG 393 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | || ||| ||| | || |||||| Sbjct 392 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCAGACTATAAC 333 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || ||||| || || ||||| || || ||||||| |||| Sbjct 332 ATTCAGAAGGAGTCGACACTCCACCTGGTGCTCAGGTTGAGGGGAGGTA 284 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| |||||||| |||||| | || || || || || Sbjct 284 ATGCAGATCTTCGTTAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGCCCTCG 225 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| |||||||||||| | || ||||| ||| Sbjct 224 GACACAATTGAGAACGTGAAAGCCAAAATTCAGGACAAGGAAGGTATCCCTCCCGATCAG 165 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| | || || ||||| || ||| | || ||| Sbjct 164 CAGCGCTTGATCTTTGCTGGTAAGCAGCTTGAGGAC 129 >seq41980 Length=230 Score = 122 bits (134), Expect = 8e-23 Identities = 122/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| ||||| || ||||| | || ||||| || ||| Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || |||| | | | ||| | ||||||||||||| | || |||||||| Sbjct 96 GACACTATTGAGAACGTTAAGGCTAAGA-TCCAGGACAAGGAAGGCATCCCTCCCGACCA 154 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || ||||| ||||| ||| ||||||| Sbjct 155 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGA 190 >seq41981 Length=230 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| ||||| || ||||| | || ||||| || ||| Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || |||||| |||||| | || ||||||||| Sbjct 96 GACACTATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCCGACCAG 155 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || ||||| ||| ||||||| Sbjct 156 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAAGA 190 >seq6450 Length=203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || || ||||| || ||||| ||||| || |||||| |||| |||||| Sbjct 6 CACGTGCTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAAAGA 65 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || ||||||||||| || || || || || || || || || || | ||||| Sbjct 66 TTCAGCCAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATC 125 Query 57807 GAAAACGTGCATTCAGAAATGTA 57829 |||||| | || || || ||||| Sbjct 126 GAAAACATCCACTCTGAGATGTA 148 >seq6449 Length=203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 |||||| | || || || ||||| || ||||| ||||| || |||||| |||| || ||| Sbjct 6 CACGTGCTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAGAGA 65 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || ||||||||||| || || || || || || || || || || | ||||| Sbjct 66 TTCAGCCAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATC 125 Query 57807 GAAAACGTGCATTCAGAAATGTA 57829 |||||| | || || |||||||| Sbjct 126 GAAAACATCCACTCTGAAATGTA 148 >seq381734 Length=9470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || ||||| ||||| || |||||| | || || || || || Sbjct 232 ATGCAGATCTTCGTGAAAACACTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCATCT 173 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || ||| ||||||||||| | || || |||||| Sbjct 172 GACACAATCGAGAATGTCAAGGCGAAAATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 113 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | | || ||||||||||| ||| ||||||| Sbjct 112 CAGAGATTGATCTTCGCTGGCAAGCAGCTGGAAGA 78 >seq194953 Length=429 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||| |||||| | | || || || || |||||||| || || || || ||||||||| Sbjct 1 TTCGGCGAGAGAGTGGTTGCCTTTGCAGCAGTCGAAGGGATTTTTTTCTCAGGCAGCTTT 60 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 ||| | || || ||| ||||||| | || |||||||||| || || || ||||||||| Sbjct 61 GCGTCCATTTTCTGGCTGAAGAAGAGAGGTTTGATGCCCGGTCTCACCTTCAGCAACGAG 120 Query 58083 TTGATATCGCGCGACGAGG 58101 | || || | || |||| Sbjct 121 CTTATTTCCAGAGATGAGG 139 >seq168520 Length=216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || |||||||| || || || || || || ||||| | || || || || || Sbjct 197 CATGCAGATCTTCGTAAAAACCCTCACGGGGAAGACCATCACACTTGAGGTCGAGCCTTC 138 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||||| || || | || ||||||||||||| | || || || || Sbjct 137 AGACACGATCGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCA 78 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||||| || || ||||| ||||| ||| | || || | | | ||| | |||||| | Sbjct 77 GCAGCGCCTTATTTTCGCCGGCAAGCAGCTAGAGGA-TGGACGCACTCTCTCCGATTACA 19 Query 31371 ACATTCAAAAAG 31382 ||||||| |||| Sbjct 18 ACATTCAGAAAG 7 >seq5983 Length=204 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || |||||||||||||| || || || |||||| | || || || || || Sbjct 65 CATGCAGATCTTTGTAAAGACTCTGACTGGAAAGACCATCACCTTGGAGGTCGAGCCCTC 124 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | ||| ||||||||| || | || || ||||| Sbjct 125 AGACACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAGGGAATCCCCCCTGACCA 184 Query 31312 GCAGCGTCTAATATTCGC 31329 |||||||||||| || || Sbjct 185 GCAGCGTCTAATCTTTGC 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443638617670800