Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq347318 105 1e-17 seq303592 93.3 8e-14 >seq347318 Length=1073 Score = 105 bits (116), Expect = 1e-17 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || || |||| ||||||||||| || || ||| ||||| || || || ||||||||| Sbjct 934 CCACCTGCAGACTTGGAGATGAGGGCGCACTGCTTCAGAGTGTCGTAGATGCCCTCAATG 875 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 || ||||| | | | || |||||||| || ||||| ||| |||| || || Sbjct 874 CTGTCATCCTTCATGGTTAGCAGGAAGCAACTTGAGAGTTGAGGTTTGACGGTGGCAGCG 815 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCA 94971 || ||||| |||||||| ||||| || |||||| | ||||| |||| || || Sbjct 814 TTGAACAGGGTGGGGGAGGCATGAGTGAAATAGCGTTCCGACAGCAGATTGTAGGTGATG 755 Query 94972 ATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGA 95031 ||| | | ||||| || || || || ||||| || | ||| | ||||| ||| Sbjct 754 ATGGTGGCATCAATGTCCTCACCATGGATACCAACAGCAACTCTCATCAGCATGTGCTGC 695 Query 95032 GGGCGCTC 95039 |||||||| Sbjct 694 GGGCGCTC 687 >seq303592 Length=754 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 93570 GTTCACCACTTGGAATGATCCTGAAAGTACATTACGATTATACATGTTGGACGTTAAAGG 93629 ||| || ||||||||| ||| ||||| ||| || | || |||||||| || | || Sbjct 352 GTTGACAACTTGGAATTCTCCAGAAAGCACACGGCGGGTGTAGATGTTGGAGGTGTATGG 293 Query 93630 CTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGATGCAGTAGGCATGGGAGCAAC 93689 ||||| | || |||||| |||||||| |||||||| ||||| |||||||||||||| Sbjct 292 CTCAATGCTCTCGTTGTTGCCGAGGATCTGAGCAGTGGAGGCAGTTGGCATGGGAGCAAC 233 Query 93690 AAACATTGAATTGTGAACACC 93710 | || || ||| | || || Sbjct 232 CAGCAGGGAGTTGCGGACGCC 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984742316481075