Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq315868 109 5e-19 seq41981 107 2e-18 seq159778 96.9 3e-15 seq381734 95.1 1e-14 seq168520 89.7 5e-13 >seq315868 Length=823 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||| | || || || || || ||||| || || Sbjct 58 CCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 117 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| ||||||||| |||||| || |||||||||||||| Sbjct 118 AGGGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGG 177 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||| | | || | |||||| | |||||| || Sbjct 178 ATACCTTCCTTGTC-CTGAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGAC 236 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| | ||| | || ||||| |||| || || ||||| || |||||| || Sbjct 237 CTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTAACGAAGATCTGCATACCT 288 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | |||| ||| || ||||| || ||| Sbjct 316 GTCGACTCCTTCTGAATGTTATAGTCTGAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCA 375 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| |||||||||||||| || || || ||||| ||| || || Sbjct 376 GCAAAGATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTA 435 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | |||||| | |||||| || |||| || | ||||| || || | ||| Sbjct 436 ACATTTTCAATTGTGTCTGAGGGCTCAACTTCAAGTGTGATGGTCTTTCCTGTGAGGGTT 495 Query 139748 TTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 496 TTGACAAAGATTTGCATA 513 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || |||||||| || ||| | Sbjct 514 CCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 573 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||| || ||||| | |||||||| |||||||||||||| Sbjct 574 AGAGTACGACCATCTTCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGG 633 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | ||| | ||||| | ||||| || Sbjct 634 ATGCCCTCCTTGTC-CTGAATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGAC 692 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || |||| || || ||||| || ||||| Sbjct 693 CTCCAAAGTGATAGTCTTTCCAGTCAGAGTCTTAACGAAGATCTGCAT 740 >seq41981 Length=230 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 139571 GACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCA 139630 || || || || ||||| || ||| || |||| ||||| ||||| || || ||| Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 170 Query 139631 TAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC 139690 | || ||||| ||||| |||||||| |||||||||||||| ||| || || | Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAACA 110 Query 139691 TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTT 139750 | || | ||||||| |||||| ||||| | || | |||||||||||||| || || Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTC 50 Query 139751 ACGAATATTTGCAT 139764 || || |||||||| Sbjct 49 ACAAAAATTTGCAT 36 >seq159778 Length=363 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139534 ATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC 139593 || ||| || || | ||||| || | || | || ||||||||||| |||||||| || Sbjct 40 ATTGCCACCACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTC 99 Query 139594 GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 139653 || || | || || | ||| || |||||| |||| ||||| ||||| ||||| Sbjct 100 AGACAGAGTACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGG 159 Query 139654 AGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 ||| |||||||| ||||| ||| || || | | || | ||||| | |||||| Sbjct 160 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTC 219 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || | |||||||| || | || || ||||| || ||||| Sbjct 220 GACCTCCAATGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq381734 Length=9470 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || ||||| |||||| | ||||| || ||||| || ||||| ||| Sbjct 78 TCTTCCAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCAGGAGGAATACCTTCCTTG 137 Query 139670 TCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | || | | || | |||||| | ||||||||||||| ||| | Sbjct 138 TCT-TGAATTTTCGCCTTGACATTCTCGATTGTGTCAGATGGCTCCACCTCAAGGGTGAT 196 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| ||||| ||||| || ||||| Sbjct 197 GGTCTTGCCAGTCAGTGTTTTCACGAAGATCTGCAT 232 >seq168520 Length=216 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 |||| |||||||| |||||| | |||| || | || || ||||| || || || | Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCA-TCCTCTAGCTGCTTGCCGGCGAAA 65 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 || || || |||||||| || || |||||||| ||||| ||| || |||| | | Sbjct 66 ATAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTT 125 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | ||||| | ||||| ||||||| || | ||||| || || | ||||||||| Sbjct 126 TCGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACG 185 Query 139754 AATATTTGCAT 139764 || || ||||| Sbjct 186 AAGATCTGCAT 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493696131508000