Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq347318 91.5 2e-13 seq41842 84.2 3e-11 >seq347318 Length=1073 Score = 91.5 bits (100), Expect = 2e-13 Identities = 212/317 (67%), Gaps = 12/317 (4%) Strand=Plus/Minus Query 72172 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 72231 |||||||| ||||| || | || | |||||||| || || |||| | ||| || | | Sbjct 1069 TTGTTTCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAGACTCGGAGCATGGGCACA 1010 Query 72232 ATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGC 72289 | ||||||||| |||||||| || | || || | ||| |||||| || | || Sbjct 1009 AGGCCATTGGATATTCCATTGGTGCCAGCAATGTATGTGCCAGAGGCACGGATGCAATGG 950 Query 72290 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 72349 ||||| || || || ||||| || ||||| | ||||| | || | || | Sbjct 949 ACATTGACG--CCAATGCCACCTGCAGACTTGGAGATGAGGGCGCACTGCTTCAGAGTGT 892 Query 72350 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-- 72407 | ||||||||||| || || |||||| ||||| | || || || || || || | ||| Sbjct 891 CGTAGATGCCCTCAATGCTGTCATCCTTCATGGTTAGCAGGAAGCAACTTGAGAGTTGAG 832 Query 72408 --GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 ||||| || | || || || | ||| || || || || || || | ||| Sbjct 831 GTTTGACG----GTGGCAGCGTTGAACAGGGTGGGGGAGGCATGAGTGAAATAGCGTTCC 776 Query 72466 GACAGTAGATTGTACGT 72482 ||||| |||||||| || Sbjct 775 GACAGCAGATTGTAGGT 759 >seq41842 Length=226 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 70879 AAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGA 70938 ||||||||| || ||||| |||| |||| || || ||||| | ||| | ||||| Sbjct 25 AAATGCATAGAGGTGAGTTTTCCATAGTTAGGCTCAGCAATGTGTACATTGAGAGACTGG 84 Query 70939 CTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATT 70998 || || || ||| ||||||| | ||| |||||||| | | ||| |||| || |||||| Sbjct 85 CTCTGGTCAATGTAGGCTCCACGGTCGGCAGCCATCTCCAGGATGCTCTTCTGGGGAATT 144 Query 70999 TCCCAAATAGT 71009 ||||| | ||| Sbjct 145 TCCCACACAGT 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667935642867400