Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq315868 145 2e-29 seq168520 140 7e-28 seq159778 125 2e-23 seq6450 87.8 4e-12 seq6449 87.8 4e-12 >seq315868 Length=823 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || | ||| || || || || | ||| || || |||||||| |||||||| Sbjct 283 ATACCTCCCCTCAACCTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCT 342 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||| || || || ||||||||||| || || | ||| ||||| ||| Sbjct 343 GAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGA 402 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || || || ||||| || || |||||||| | || || || || Sbjct 403 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCA 462 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || ||||| || || || ||||| ||||| || ||||| Sbjct 463 ACTTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || ||||| | ||| ||||| | || || ||| Sbjct 544 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCTTCCAACTGCTTGCCA 603 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| ||||| || || || || ||||||||||| || || Sbjct 604 GCGAAAATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTG 663 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || ||| || ||||| | || |||||||| ||||| || || Sbjct 664 ACATTTTCAATGGTGTCAGAAGGCTCGACCTCCAAAGTGATAGTCTTTCCAGTCAGAGTC 723 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 724 TTAACGAAGATCTGCAT 740 >seq168520 Length=216 Score = 140 bits (154), Expect = 7e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||||||||| || || || || ||||| | || || ||||| || || || || |||| Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| |||||||| || || ||||| || ||||| ||||| || |||||||||| Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || || ||| || ||||| ||||| || ||||| || || || |||||||| | Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 187 AGATCTGCAT 196 >seq159778 Length=363 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || ||||| || || ||||||||||| ||||| | ||| || Sbjct 59 AGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGACAGAGTACGACCATCC 118 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||| || || |||||||| || || | ||| || || ||||| || ||||| || ||| Sbjct 119 TCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 178 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||| || || || ||||| | ||| || ||| Sbjct 179 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACCTCCAATGTGATGGTC 238 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 239 TTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq6450 Length=203 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 ||||| || ||||| | |||||| || || || || ||||| || || | ||| | Sbjct 12 CTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAAAGATTCAGC 71 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 || || || || | | |||||||| ||||| || || |||||||| || || ||||| Sbjct 72 CAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATCGAAAAC 131 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || || || |||||||||||||| | || | ||||| || Sbjct 132 ATCCACTCTGAGATGTACAGTCTCCTCATTAACACTTACAT 172 >seq6449 Length=203 Score = 87.8 bits (96), Expect = 4e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 ||||| || ||||| | |||||| || || || || ||||| || |||| ||| | Sbjct 12 CTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAGAGATTCAGC 71 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 || || || || | | |||||||| ||||| || || |||||||| || || ||||| Sbjct 72 CAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATCGAAAAC 131 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 || || || || ||||||||||| | || | ||||| || Sbjct 132 ATCCACTCTGAAATGTACAGTCTCCTCATTAACACTTACAT 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1145765016015420