Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq381734 129 5e-25 seq315868 120 3e-22 seq5983 96.9 3e-15 seq104930 93.3 4e-14 seq41981 93.3 4e-14 seq168520 89.7 5e-13 seq75430 86.0 6e-12 >seq381734 Length=9470 Score = 129 bits (142), Expect = 5e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || | ||||| ||||| ||||| || |||||||||||||| || Sbjct 77 ATCTTCCAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCAGGAGGAATACCTTCCTT 136 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| |||||||| ||| ||||||| | || || |||| ||||| Sbjct 137 GTCTTGAATTTTCGCCTTGACATTCTCGATTGTGTCAGATGGCTCCACCTCAAGGGTGAT 196 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 ||| || ||||| || |||||||| ||||||||||| || Sbjct 197 GGTCTTGCCAGTCAGTGTTTTCACGAAGATCTGCATTCT 235 >seq315868 Length=823 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||| || | || |||| |||||||| | || |||||||| || | ||| || || Sbjct 54 CATTCCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 113 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || | ||||| ||||| || || ||||||| || | |||||||| || Sbjct 114 CGAAAGGGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGG 173 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||| |||||||| ||||| | |||||| || || ||| | | ||||| | | | || Sbjct 174 AGGGATACCTTCCTTGTCCTGAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTC 233 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||||||||| ||||| ||||| || || ||||||||||| Sbjct 234 GACCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| || ||| || ||| ||| || Sbjct 531 CACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCTTC 590 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || | || || | | |||||||| ||||| || || || ||||| | Sbjct 591 CAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTG 650 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || |||||||| | | ||||||| | ||||| || | ||||| || || Sbjct 651 AATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACCTCCAAAGTGATAGTCTT 710 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||| ||||| || || ||||||||||||| Sbjct 711 TCCAGTCAGAGTCTTAACGAAGATCTGCATGC 742 >seq5983 Length=204 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || ||||||||| | ||||| || || || || || || ||||| | ||||| |||| Sbjct 204 CGGCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCT 145 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | ||| ||| ||||| | | | ||||| || | |||||||| |||||||| |||| Sbjct 144 TCACGTTCTCGATGGTGTCTGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCAGTCAGAG 85 Query 94989 TTTTCACAAAGATCTGCATGC 95009 | || |||||||||||||||| Sbjct 84 TCTTTACAAAGATCTGCATGC 64 >seq104930 Length=294 Score = 93.3 bits (102), Expect = 4e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || ||||||||| | ||||| || || || || || || ||||| | ||||| |||| Sbjct 1 CGGCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCT 60 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 ||||| ||| ||||| | | | || || || | |||||||| |||||||| || | Sbjct 61 TGACGTTCTCGATGGTGTCTGAGGGCTCAACCTCCAAGGTGATGGTCTTTCCAGTCAGGG 120 Query 94989 TTTTCACAAAGATCTGCAT 95007 | ||||||||||||||||| Sbjct 121 TCTTCACAAAGATCTGCAT 139 >seq41981 Length=230 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 94814 GATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCA 94873 |||||||| || | ||| || ||| || ||| | ||| |||||||| || ||| || Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 170 Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 || || | | ||||| || ||||| || ||||||||||| | || || ||||| || Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAACA 110 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | |||||| | | | || || || | |||||||| || || || | ||| ||| Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTC 50 Query 94994 ACAAAGATCTGCAT 95007 ||||| || ||||| Sbjct 49 ACAAAAATTTGCAT 36 >seq168520 Length=216 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 94818 CCTTT-TGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| |||||| | |||| |||||| ||||| || ||| | || Sbjct 6 CCTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAA 65 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | |||||||| || || || ||||| ||||| | || || ||||| || Sbjct 66 ATAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTT 125 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| ||||| | | ||||| |||| |||||||| || || || || ||||| || Sbjct 126 TCGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACG 185 Query 94997 AAGATCTGCATGCT 95010 |||||||||||||| Sbjct 186 AAGATCTGCATGCT 199 >seq75430 Length=261 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || || || || | ||| ||||| || ||| | |||||| ||||| || || Sbjct 202 GTTGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCT 143 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 |||| || | | ||||| || || || || || || ||||| | || || |||||| Sbjct 142 GCAAAAATAAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTG 83 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| || || | | | || || || | |||||||| ||||||||||| || Sbjct 82 ACGTTCTCGATGGTATCTGAGGGCTCAACCTCCAAAGTGATGGTCTTTCCAGTAAGGGTC 23 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 22 TTAACGAAGATCTGCAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446151366011400