Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq347318 120 8e-22 seq303592 91.5 4e-13 >seq347318 Length=1073 Score = 120 bits (132), Expect = 8e-22 Identities = 260/382 (68%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || ||||||||||| ||| | ||| | |||||| ||||||||||| | ||| ||||| Sbjct 687 GAGCGCCCGCAGCACATGCTGATGAGAGTTGCTGTTGGTATCCATGGTGAGGACATTGAT 746 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 ||| | || || || || || || | || ||||| || ||| | || || Sbjct 747 GCCACCATCATCACCTACAATCTGCTGTCGGAACGCTATTTCACTCATGCCTCCCCCACC 806 Query 363568 ATGTACAATGCTGGAACTCGT-AATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 ||| ||| |||| || ||| || || || | || |||||| || |||| ||||| Sbjct 807 CTGTTCAACGCTGCCAC-CGTCAAACCTCAACTCTCAAGTTGCTTCCTGCTAACCATGAA 865 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||| || ||| ||||| |||| ||||| || ||| | || || || || |||||| Sbjct 866 GGATGACAGCATTGAGGGCATCTACGACACTCTGAAGCAGTGCGCCCTCATCTCCAAGTC 925 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGCACAGAACAGTTACATTCGC 363744 |||||| || ||||| | || || || || | ||||| || |||||| Sbjct 926 TGCAGGTGGCATTGGCG--TCAATGTCCATTGCATCCGTGCCTCTGGCACATACATTGCT 983 Query 363745 GGCA-CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 |||| || || ||| || ||||| || || |||||||| || || | |||| || || Sbjct 984 GGCACCAATGGAATA-TCCAATGGCCTTGTGCCCATGCTCCGAGTCTACAACAACACCGC 1042 Query 363804 GAGGTACGTCGACCAGGGTGGA 363825 | || || |||||||||||| Sbjct 1043 CCGCTATGTTGACCAGGGTGGA 1064 >seq303592 Length=754 Score = 91.5 bits (100), Expect = 4e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 ||||||||||| | || |||||||| || || || ||||| ||||||||||| ||| Sbjct 218 CGCAACTCCCTGCTGGTTGCTCCCATGCCAACTGCCTCCACTGCTCAGATCCTCGGCAAC 277 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||| || | || || | || ||| | || | ||||| || ||||| |||||| Sbjct 278 AACGAGAGCATTGAGCCATACACCTCCAACATCTACACCCGCCGTGTGCTTTCTGGAGAA 337 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || | || || || | |||| ||| || || |||| | || |||||| ||| Sbjct 338 TTCCAAGTTGTCAACCATCACCTGCTCAGAGACCTGACCGAGCAGGGCCTGTGGAATGAT 397 Query 364912 AGCATGAAGAACTATATCAT 364931 |||| |||| | |||||| Sbjct 398 GGCATCAAGACCACTATCAT 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1296976753118430