Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq41981 102 7e-17 seq159778 96.9 3e-15 seq41980 89.7 4e-13 seq315868 87.8 1e-12 >seq41981 Length=230 Score = 102 bits (112), Expect = 7e-17 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 16741 GGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGC 16800 ||| ||||| || ||||||||||||| || ||| | | || |||| || ||||| || Sbjct 230 GGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGC 171 Query 16801 ATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTC 16858 | |||| || ||||| ||||| ||| | ||| |||||||| || || || ||| Sbjct 170 AAAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGC--CTTA 113 Query 16859 ACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTT 16918 || | | | ||||||| |||||| |||| |||||||| || ||||||| || Sbjct 112 ACATTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTC 53 Query 16919 TTGACAAAAATCTGCAT 16935 || |||||||| ||||| Sbjct 52 TTCACAAAAATTTGCAT 36 >seq159778 Length=363 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||| || |||||||| ||||| ||||| ||||| | | Sbjct 44 CCACCACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGAC 103 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| || || ||||| ||| | || || ||||| ||||| ||| Sbjct 104 AGAGTACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGA 163 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || |||||| | | | ||||| |||||| Sbjct 164 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCAGAGGGCTCGA 221 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || || || || ||||| ||||||||||| Sbjct 222 CCTCCAATGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq41980 Length=230 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 16741 GGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGC 16800 ||| ||||| || ||||||||||||| || ||| | | || |||| || ||||| || Sbjct 230 GGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGC 171 Query 16801 ATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTC 16858 |||| || ||||| ||||| ||| | ||| || ||||| || || || ||| Sbjct 170 GAAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGC--CTTA 113 Query 16859 ACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTT 16918 || | | | ||||||| |||||| |||| |||||||| || || |||| || Sbjct 112 ACGTTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTC 53 Query 16919 TTGACAAAAATCTGCAT 16935 || |||||||| ||||| Sbjct 52 TTCACAAAAATTTGCAT 36 >seq315868 Length=823 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||| ||||| || ||||||||||| | Sbjct 58 CCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAA 117 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || ||| | || | ||||| || || ||| Sbjct 118 AGGGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGG 177 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| ||||| ||| ||||| | | | ||||| |||||| Sbjct 178 ATACCTTCCTTGTCCTGAATTTTGGCT--TTCACGTTCTCAATTGTGTCCGAGGGCTCGA 235 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| || ||||| || || || || |||||||| Sbjct 236 CCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || ||||||||||||| || || | || Sbjct 529 AGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCT 588 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || ||||| || |||| || ||||| || || ||| | |||||| ||||| Sbjct 589 TCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCC 648 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | ||||| ||||| |||| ||||| || Sbjct 649 TGAATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACCTCCAAAGTGATAGTC 708 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||| || || || || |||||||| Sbjct 709 TTTCCAGTCAGAGTCTTAACGAAGATCTGCAT 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403202728676350