Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq41981 131 1e-25 seq41980 118 9e-22 seq5983 89.7 4e-13 >seq41981 Length=230 Score = 131 bits (144), Expect = 1e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| |||||||||||||| || ||||||| | || || ||| | || Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| | ||| || ||| ||||||||||| || || || ||||| Sbjct 96 GACACTATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCCGACCAG 155 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | |||||||||||||| || | ||||||| ||||| || ||| ||||| Sbjct 156 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 215 Query 25179 ATTCAAAAAGAATCC 25193 || || || |||||| Sbjct 216 ATCCAGAAGGAATCC 230 >seq41980 Length=230 Score = 118 bits (130), Expect = 9e-22 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||||||||| || || ||||||| | || || ||| | || Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| | ||| || ||| ||||| ||||| || || || ||||| Sbjct 96 GACACTATTGAGAACGTTAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 155 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| || | ||||||| ||||| || ||| ||||| Sbjct 156 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 215 Query 25179 ATTCAAAAAGAATCC 25193 || || || |||||| Sbjct 216 ATCCAGAAGGAATCC 230 >seq5983 Length=204 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||||||| |||| || || ||||||| | || || ||| | || Sbjct 66 ATGCAGATCTTTGTAAAGACTCTGACTGGAAAGACCATCACCTTGGAGGTCGAGCCCTCA 125 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| |||||| ||||| || || || || |||||||| Sbjct 126 GACACCATCGAGAACGTGAAGGCTAAAATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 185 Query 25119 CAGCGGATTATTTTTGCCG 25137 ||||| | || ||||||| Sbjct 186 CAGCGTCTAATCTTTGCCG 204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431311300289975