Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq181382 116 4e-21 seq6449 102 9e-17 seq116674 84.2 2e-11 >seq181382 Length=402 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| ||| |||||||||||| ||||| |||||||||| ||||||| Sbjct 86 GTCAGGTTGGCCGAGCGGTTTAAGGCGCCAGACTTAAGTTCTGGTTCCCGAAGGGGAGCG 27 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 26 TGGGTTCGAACCCCACACCTGACAAA 1 >seq6449 Length=203 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||||||||||| |||| || || || || || ||||| || |||||||| || ||||| Sbjct 148 TACATTTCAGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAGAAACACCTGGCTTCG 89 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 |||| |||||||| || |||||||| || ||||| ||||| || || ||||| || Sbjct 88 GTGACTTGCACTTCCTGGCTGAATCTCTCAACCAGATTCTCATTCACAATTCCATCAGAG 29 Query 93506 GCTGCaaaaaaaGC 93519 || ||||| || || Sbjct 28 GCGGCAAAGAAGGC 15 >seq116674 Length=308 Score = 84.2 bits (92), Expect = 2e-11 Identities = 62/70 (89%), Gaps = 3/70 (4%) Strand=Plus/Plus Query 126291 CGCCAGATTTAAGATCTGGTTCCCTC--GGGAGCGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 CGCCAGACTTAAGTTCTGGTTCCCGAAGGGGAGCGTGGGTTCGAACCCCACACCTGACAA 60 Query 126349 AT-TATTATT 126357 || | ||||| Sbjct 61 ATCTTTTATT 70 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554202729382600