Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq75430 125 6e-24 seq41981 123 2e-23 seq315868 114 1e-20 seq41980 114 1e-20 seq168520 104 2e-17 seq159778 98.7 8e-16 seq381734 82.4 6e-11 >seq75430 Length=261 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || | || || || || ||||| | || || || || | Sbjct 6 ATGCAGATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTTTGGAGGTTGAGCCCTCA 65 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || || ||||||||||| || || || || || Sbjct 66 GATACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 125 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| ||| | |||||| ||||||| | || ||||||||| Sbjct 126 CAGCGTCTTATTTTTGCAGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGATTACAAC 185 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || ||| | ||| | ||| | || ||||||| || Sbjct 186 ATCCAGAAAGAGTCAACCCTCCATCTTGTTCTCCGTCTGCGCGGTGG 232 >seq41981 Length=230 Score = 123 bits (136), Expect = 2e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| || ||||| ||||| || || ||||| | || || || || | Sbjct 35 GATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCCTC 94 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || || | || || || || ||||| || || || || ||||| || Sbjct 95 CGACACTATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCCGACCA 154 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||||| || ||||||||||| ||| | || ||| ||||||| | ||||| ||||| Sbjct 155 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 214 Query 22398 CATTCAAAAAGAATCC 22413 ||| || || |||||| Sbjct 215 CATCCAGAAGGAATCC 230 >seq315868 Length=823 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| ||| | || || || || ||||| | || || || | | Sbjct 740 ATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACTATCACTTTGGAGGTCGAGCCTTCT 681 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || ||||| ||||||||||| || || |||||||| Sbjct 680 GACACCATTGAAAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 621 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||| ||||| || ||| || || | ||||| |||||| Sbjct 620 CAGCGTCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTGTCCGACTACAAC 561 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || |||||| | || || || | || |||| || ||| Sbjct 560 ATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGT 513 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || || || |||| |||||||| || || | Sbjct 512 ATGCAAATCTTTGTCAAAACCCTCACAGGAAAGACCATCACACTTGAAGTTGAGCCCTCA 453 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || |||||||||||||| || || |||||||| Sbjct 452 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGATCAG 393 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | ||||| |||||| |||| || || ||| Sbjct 392 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCAGACTATAAC 333 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 332 ATTCAGAAGGAGTCGAC 316 >seq41980 Length=230 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| || ||||| || || || || ||||| | || || || || | Sbjct 35 GATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTC 94 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || | | || || || || |||||||| || || || ||||| || Sbjct 95 CGACACTATTGAGAACGTTAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCA 154 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||||| || || |||||||| ||| | || ||| ||||||| | ||||| ||||| Sbjct 155 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 214 Query 22398 CATTCAAAAAGAATCC 22413 ||| || || |||||| Sbjct 215 CATCCAGAAGGAATCC 230 >seq168520 Length=216 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || |||| ||||| || || | | Sbjct 196 ATGCAGATCTTCGTAAAAACCCTCACGGGGAAGACCATCACACTTGAGGTCGAGCCTTCA 137 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || || |||||||| || || || || ||||| Sbjct 136 GACACGATCGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAG 77 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || |||||||| ||| |||||||| ||||| |||||||||||||| Sbjct 76 CAGCGCCTTATTTTCGCCGGCAAGCAGCTAGAGGATGGACGCACTCTCTCCGATTACAAC 17 Query 22399 ATTCAAAAAG 22408 ||||| |||| Sbjct 16 ATTCAGAAAG 7 >seq159778 Length=363 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| | || || || || | Sbjct 270 ATGCAGATTTTCGTCAAGACCCTCACAGGCAAGACCATCACATTGGAGGTCGAGCCCTCT 211 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || |||||||| || ||||| ||||| || Sbjct 210 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 151 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| |||||||||||| || || | || || || ||| Sbjct 150 CAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAGGATGGTCGTACTCTGTCTGACTATAAC 91 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || |||||||| ||||| | ||| | || |||| |||| || || Sbjct 90 ATCCAAAAAGAGTCCACTCTCCATCTGGTCCTGCGTCTGCGTGGTGG 44 >seq381734 Length=9470 Score = 82.4 bits (90), Expect = 6e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || || || |||| ||||| ||||| | | Sbjct 232 ATGCAGATCTTCGTGAAAACACTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCATCT 173 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||||||||||||||||| |||||||| || || || Sbjct 172 GACACAATCGAGAATGTCAAGGCGAAAATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 113 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || ||||| ||| | || ||| |||||| | || || ||||| Sbjct 112 CAGAGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAT 53 Query 22399 ATTCAAAA 22406 || || || Sbjct 52 ATCCAGAA 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417774594413725