Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq194953 102 2e-16 seq6450 95.1 2e-14 seq6449 89.7 1e-12 seq347318 84.2 4e-11 >seq194953 Length=429 Score = 102 bits (112), Expect = 2e-16 Identities = 108/140 (77%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 ||||||||||| |||| |||||| | || ||||| || || || ||||| ||| ||| Sbjct 1 TTCGGCGAGAGAGTGGTTGCCTTTGCAGCAGTCGAAGGGATTTTTTTCTCAGGCAGCTTT 60 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || ||||| |||||||| ||| ||| |||| | ||||||||| ||||||||| ||||| Sbjct 61 GCGTCCATTTTCTGGCTGAAGAAGAGAGGT-TTGATGCCCGGTCTCACCTTCAGCAACGA 119 Query 42812 ACTCATCAGCAGGGACGAGG 42831 || || ||| || |||| Sbjct 120 GCTTATTTCCAGAGATGAGG 139 >seq6450 Length=203 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| ||||||||||| || || || |||||||| |||| || |||| Sbjct 12 CTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAAAGATTCAGC 71 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | || ||||| | || || | || ||||| ||||||||||| ||||| || ||| Sbjct 72 CAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATCGAAAAC 131 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTC---AACACGTACATCCTGGATCCC 42593 | ||||||||| |||| || || ||| ||||| ||||||| ||| ||| Sbjct 132 ATCCACTCTGAGATGTA---CAGTCTCCTCATTAACACTTACATCCAGGAACCC 182 >seq6449 Length=203 Score = 89.7 bits (98), Expect = 1e-12 Identities = 125/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| ||||||||||| || || || |||||||| |||| || |||| Sbjct 12 CTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAGAGATTCAGC 71 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | || ||||| | || || | || ||||| ||||||||||| ||||| || ||| Sbjct 72 CAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATCGAAAAC 131 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTC---AACACGTACATCCTGGATCCC 42593 | |||||||| |||| || || ||| ||||| ||||||| ||| ||| Sbjct 132 ATCCACTCTGAAATGTA---CAGTCTCCTCATTAACACTTACATCCAGGAACCC 182 >seq347318 Length=1073 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 245299 CTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTT 245358 |||||||||||||||||| ||| | ||||| |||||||| |||||||| ||| Sbjct 923 CTTGGAGATGAGGGCGCACTGCTTCAGAGTGTCGTAGATGCCCTCAATGCTGTCATCCTT 864 Query 245359 CATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGT 245418 |||| | ||||| ||||| || || || || ||| | || | ||||||||| || Sbjct 863 CATGGTTAGCAGGAAGCAACTTGAGAGTTGAGGTTTGACGGTGGCAGCGTTGAACAGGGT 804 Query 245419 GGGGCTGGCGTGGGTAAAGTAGCG 245442 |||| ||| || || || ||||| Sbjct 803 GGGGGAGGCATGAGTGAAATAGCG 780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 939831573892400