Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq41981 152 5e-32 seq41980 134 1e-26 seq315868 132 5e-26 seq75430 118 1e-21 seq381734 111 2e-19 seq159778 107 2e-18 seq168520 100 3e-16 seq104930 82.4 8e-11 >seq41981 Length=230 Score = 152 bits (168), Expect = 5e-32 Identities = 150/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 ||||| || || |||||||| || | | |||||| | ||||| ||||||||||||||| Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 170 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 ||||||| ||||||||||||||||| || |||||||| || || || || ||| ||| Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAACA 110 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| | || || || || || || | ||| | |||||||||||||||||| || Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTC 50 Query 64430 ACGAAAATTTGCAT 64443 || ||||||||||| Sbjct 49 ACAAAAATTTGCAT 36 >seq41980 Length=230 Score = 134 bits (148), Expect = 1e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 ||||| || || |||||||| || | | |||||| | ||||| |||||||||||||| Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCG 170 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 ||||||| ||||||||||||||||| || ||||| || || || || || ||| || Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAACG 110 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| | || || || || || || | ||| | ||||||||| |||||||| || Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTC 50 Query 64430 ACGAAAATTTGCAT 64443 || ||||||||||| Sbjct 49 ACAAAAATTTGCAT 36 >seq315868 Length=823 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| || ||||| || || | ||||| || || |||||||| || |||| Sbjct 285 ACCTCCCCTCAACCTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGA 344 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||| ||||||||||| || ||| | ||||| |||||||| |||||||| Sbjct 345 GAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGG 404 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || ||||| || || ||| ||| || | ||| || || || || Sbjct 405 GATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAAC 464 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||| || || | ||||| || || |||||||| Sbjct 465 TTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||| || |||| ||||||||||| || Sbjct 88 GTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCAAGCTGCTTACCA 147 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | |||||||| |||||||| || ||||| || || || | |||| ||||| Sbjct 148 GCAAAGATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTG-AATTTTGGCTTT 206 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | ||| || || || || || | || | ||| ||||| |||| ||| Sbjct 207 CACGTTCTCAATTGTGTCCGAGGGCTCGACCTCCAGGGTGATGGTTTTGCCAGTCAGAGT 266 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 267 CTTAACGAAGATCTGCAT 284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | |||| || || || || ||||||||||| || | Sbjct 513 ACCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 572 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | ||||||||| || |||| || |||||||| |||||||| Sbjct 573 CAGAGTACGACCATCTTCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGG 632 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || ||| | || || Sbjct 633 GATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGAC 692 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||| || |||| ||| || ||||| || ||||| Sbjct 693 CTCCAAAGTGATAGTCTTTCCAGTCAGAGTCTTAACGAAGATCTGCAT 740 >seq75430 Length=261 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || ||||| | || || ||||| || ||||||||||| | Sbjct 232 CCACCGCGCAGACGGAGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATCAGAC 173 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || |||||||||||||| ||| |||| || ||||||||||| || || Sbjct 172 AGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGGGGGG 113 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || || || || ||| || ||| | ||||| || || || Sbjct 112 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCTGAGGGCTCAACC 53 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | ||| | |||||| || || | || || ||||| || |||||| Sbjct 52 TCCAAAGTGATGGTCTTTCCAGTAAGGGTCTTAACGAAGATCTGCATT 5 >seq381734 Length=9470 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || || ||||| || | | |||||| | ||||| ||||||||||| || | || Sbjct 45 TTCTGGATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATC 104 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | | ||||||||| |||||||| ||||| || ||||| ||||| ||| ||| ||| Sbjct 105 AATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTCTCG 164 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | ||| ||| | ||||| || | || | ||||||||| |||| ||||| ||||| Sbjct 165 ATTGTGTCAGATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCACGAAG 224 Query 64436 ATTTGCATT 64444 || |||||| Sbjct 225 ATCTGCATT 233 >seq159778 Length=363 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || |||||||| ||||| || || | | || || | || Sbjct 59 AGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGACAGAGTACGACCATCC 118 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||| ||| | ||||| |||||||||||||||||||| ||||| || || Sbjct 119 TCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 178 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || ||| || || || || | || | |||| Sbjct 179 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACCTCCAATGTGATGGTC 238 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || |||||||| ||||| Sbjct 239 TTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq168520 Length=216 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| |||||||||||||| | || ||||| | || || |||||||||||||| ||| Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | || |||||||| || || || || ||||| || || || || || ||||||| | Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || || | || || || | || | |||||| || || | |||||||||| Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 187 AGATCTGCAT 196 >seq104930 Length=294 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | |||||| |||| ||||||||||| || Sbjct 171 GTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGCTGCTTACCA 230 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || | |||||||| |||||||| || ||||| || || || || || Sbjct 231 GCAAAGATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGGATCTT 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497259839230600