Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq298802 118 1e-21 seq303592 109 5e-19 seq347318 98.7 1e-15 >seq298802 Length=733 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | ||||| ||||| |||||||| || |||||||| || |||||||| ||||||||| Sbjct 521 AACTCCCTGCTGGTGGCTCCCATGCCAACCGCCTCCACTGCTCAGATCCTCGGCAACAAC 462 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 ||| | || || | |||||||||| | |||| | | || |||||| | || |||||| Sbjct 461 GAGAGCATTGAGCCATACACCTCCAACATCTACACCCGCCGTGTGCTCTCTGGAGAATTC 402 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGAC 95243 | || ||||| | ||||| || | |||||||| Sbjct 401 CAAGTTGTCAACCATCACCTGCTCAGAGACCTGAC 367 >seq303592 Length=754 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | ||||| || || |||||||| || |||||||| || |||||||| ||||||||| Sbjct 221 AACTCCCTGCTGGTTGCTCCCATGCCAACTGCCTCCACTGCTCAGATCCTCGGCAACAAC 280 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 ||| | || || | |||||||||| | |||| | | || ||||| | || |||||| Sbjct 281 GAGAGCATTGAGCCATACACCTCCAACATCTACACCCGCCGTGTGCTTTCTGGAGAATTC 340 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGAC 95243 | || ||||| | ||||| || | |||||||| Sbjct 341 CAAGTTGTCAACCATCACCTGCTCAGAGACCTGAC 375 >seq347318 Length=1073 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| |||| |||||||||||||| | ||| || || | || || |||||| Sbjct 795 GCCTCCCCCACCCTGTTCAACGCTGCCACCGTCAAACCTCAACTCTCAAGTTGCTTCCTG 854 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || | |||| ||| ||| || || | ||||| || ||| | || || | Sbjct 855 CTAACCATGAAGGATGACAGCATTGAGGGCATCTACGACACTCTGAAGCAGTGCGCCCTC 914 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || ||| |||||| | | |||||| || | Sbjct 915 ATCTCCAAGTCTGCAGGTGGCATTGGCGTCAATGTCCATTGCATCCGTGCCTCTGGCACA 974 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| || |||||||| | ||||| ||||| || || |||||||| |||| |||| Sbjct 975 TACATTGCTGGCACCAATGGAATATCCAATGGCCTTGTGCCCATGCTCCGAGTCTACAAC 1034 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGG 94160 ||| | || ||||| || ||||||||||| Sbjct 1035 AACACCGCCCGCTATGTTGACCAGGGTGG 1063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492361731565400