Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq315868 132 5e-26 seq159778 109 5e-19 seq168520 105 6e-18 seq5983 86.0 6e-12 seq104930 84.2 2e-11 >seq315868 Length=823 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| || ||||| ||||| ||| | Sbjct 514 CCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 573 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||| || |||||| | |||| ||||||||||||||||| Sbjct 574 AGAGTACGACCATCTTCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGG 633 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | ||| | |||||| | | |||||| Sbjct 634 ATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACC 693 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | || | || || || |||||||| || || || ||||||||| || Sbjct 694 TCCAAAGTGATAGTCTTTCCAGTCAGAGTCTTAACGAAGATCTGCATGCCT 744 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| ||||| || | || || || || || || ||||| || Sbjct 57 TCCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGA 116 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || || || ||||| || ||||| ||||||| ||||||||||||||||| Sbjct 117 AAGGGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGG 176 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||||||| ||| ||| || || | | || | ||||||| ||||| Sbjct 177 GATACCTTCCTTGTCC-TGAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGA 235 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| | |||||||| |||||||| || || || |||||||| Sbjct 236 CCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTAACGAAGATCTGCAT 284 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | || ||||| || ||||| || || || | ||||| || || Sbjct 303 CACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGAGAGAGTGCGGCCGTCCTC 362 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| |||||||| |||| | ||||||||||||||||| || ||||||||||| Sbjct 363 AAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTGTCTTG 422 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||| | | ||| | ||||| | ||| ||||| | || | || || Sbjct 423 GATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACTTCAAGTGTGATGGTCTT 482 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| ||||| || ||||| Sbjct 483 TCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 >seq159778 Length=363 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||| ||| | || ||||||||||| || || || || | Sbjct 44 CCACCACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGAC 103 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| |||| ||| || ||||| |||| | |||||||| |||||||| Sbjct 104 AGAGTACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGA 163 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||||||| ||| || ||| | | || | |||||| | |||||| Sbjct 164 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACC 223 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| || || || || || |||||||||||| Sbjct 224 TCCAATGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCATG 271 >seq168520 Length=216 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| ||||| ||||||||| | ||||| ||| |||||||| || || ||| | | Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 | | ||||||||||| || || ||||| ||||||||| ||| || ||| | | || Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| ||||| | | |||||| || | || | || || || || || |||||||| | Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 127104 AAATCTGCATG 127114 | ||||||||| Sbjct 187 AGATCTGCATG 197 >seq5983 Length=204 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | |||||||| || || || || |||||||||||| |||||| ||| | | Sbjct 198 AGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCTTCACGT 139 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||| | |||||| || | ||| | || || || |||||||| |||| Sbjct 138 TCTCGATGGTGTCTGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCAGTCAGAGTCTTTA 79 Query 127101 CAAAAATCTGCATGGCT 127117 |||| ||||||||| || Sbjct 78 CAAAGATCTGCATGCCT 62 >seq104930 Length=294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||| ||||| || | || || || || || || ||||| || Sbjct 140 TCCACCGCGCAGACGCAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGA 199 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || || ||||| || ||||| ||||||| ||||||||||||||||| Sbjct 200 AAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGG 259 Query 127006 TATGCCCTCCTTGTCCGTGATTTT 127029 || || ||||||||| ||| || Sbjct 260 GATACCTTCCTTGTCCTGGATCTT 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473231086087600