Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq159778 154 3e-32 seq41980 138 3e-27 seq41981 132 1e-25 seq315868 125 2e-23 seq75430 116 9e-21 seq381734 104 5e-17 seq5983 84.2 5e-11 >seq159778 Length=363 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || |||||||| ||||| ||||||| ||| ||||||| || ||| Sbjct 50 CGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGACAGAGTA 109 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || | |||||| || || |||||||||||||||||||| ||| ||| ||| Sbjct 110 CGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGAATGCCT 169 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| || | |||||| | | || || ||||| Sbjct 170 TCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACCTCCAAT 229 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || ||||| || Sbjct 230 GTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTG 267 >seq41980 Length=230 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 199436 GACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCG 199495 || ||||| |||| ||||||||| | || || | ||||||||||||||||| |||||| Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCG 170 Query 199496 AAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACG 199555 || ||||||||||||||||| ||| || ||||| ||||| ||||| ||| ||| Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAACG 110 Query 199556 GATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTC 199615 || | ||||| | | || || ||||| ||||| ||||| || || | ||| ||| Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTC 50 Query 199616 ACAAAAATTTG 199626 ||||||||||| Sbjct 49 ACAAAAATTTG 39 >seq41981 Length=230 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 199436 GACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCG 199495 || ||||| |||| ||||||||| | || || | ||||||||||||||||| ||||| Sbjct 229 GATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 170 Query 199496 AAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACG 199555 || ||||||||||||||||| ||| || |||||| ||||| ||||| ||| || Sbjct 169 AAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAACA 110 Query 199556 GATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTC 199615 || | ||||| | | || || ||||| ||||| ||||| || || | ||| ||| Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTC 50 Query 199616 ACAAAAATTTG 199626 ||||||||||| Sbjct 49 ACAAAAATTTG 39 >seq315868 Length=823 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || || || |||||||| ||||||||||| || | ||| ||||| | | ||| | || Sbjct 298 CTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGAGAGAGTGCGGCCG 357 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 || || ||||||||||| || ||||||||||||||||| || ||| ||||| || Sbjct 358 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTG 417 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || || ||||| ||| || ||| | ||||||| | || || || | ||||| Sbjct 418 TCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACTTCAAGTGTGATG 477 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| ||||| ||||| ||||| Sbjct 478 GTCTTTCCTGTGAGGGTTTTGACAAAGATTTG 509 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| || | ||||||||| | || ||| | |||||| Sbjct 529 AGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCT 588 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || ||||| || ||||||||||| || ||| || || || ||| Sbjct 589 TCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCC 648 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || ||| | |||||| | | || || ||||| ||||| ||| Sbjct 649 TGAATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACCTCCAAAGTGATAGTC 708 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || || || Sbjct 709 TTTCCAGTCAGAGTCTTAACGAAGATCTG 737 >seq75430 Length=261 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || ||||| || |||| |||||| |||| || || | ||||| Sbjct 217 AGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGGCCATCC 158 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || || || |||||||||||||| || ||||| || ||| Sbjct 157 TCAAGCTGCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCC 98 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| |||| | || || ||||| ||||| ||| Sbjct 97 TGGATCTTAGCCTTGACGTTCTCGATGGTATCTGAGGGCTCAACCTCCAAAGTGATGGTC 38 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || Sbjct 37 TTTCCAGTAAGGGTCTTAACGAAGATCTG 9 >seq381734 Length=9470 Score = 104 bits (114), Expect = 5e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| |||||||||| || || | ||||||||||||||||| || ||||||| Sbjct 43 CCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGA 102 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | | ||||||||| ||| ||| ||||| || ||||| || ||| || | Sbjct 103 TCAATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTCT 162 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | || || || || | ||||| ||||| || || || |||||||| | Sbjct 163 CGATTGTGTCAGATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCACGA 222 Query 199620 AAATTTG 199626 | || || Sbjct 223 AGATCTG 229 >seq5983 Length=204 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 199491 CGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCT 199550 |||| ||||| |||||||||||||| || ||||| || ||||| || || || Sbjct 204 CGGCAAAGATTAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATTTTAGCCT 145 Query 199551 TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 ||||| |||| |||||||| | || || ||||| ||||| ||||| || || |||| Sbjct 144 TCACGTTCTCGATGGTGTCTGAGGGCTCGACCTCCAAGGTGATGGTCTTTCCAGTCAGAG 85 Query 199611 TTTTCACAAAAATTTG 199626 | || ||||| || || Sbjct 84 TCTTTACAAAGATCTG 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173153554759955