Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq41980 129 7e-25 seq41981 120 3e-22 seq381734 116 4e-21 seq315868 109 6e-19 seq159778 109 6e-19 seq168520 107 2e-18 seq75430 96.9 4e-15 seq104930 89.7 6e-13 seq42666 87.8 2e-12 >seq41980 Length=230 Score = 129 bits (142), Expect = 7e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || ||||| | || || ||||||||||||||||| Sbjct 226 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAA 167 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | || ||||||||| |||||| ||| | || Sbjct 166 ATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTTC 107 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || |||| |||||||| ||||| |||| || || ||| Sbjct 106 TCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACA 47 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 46 AAAATTTGCAT 36 >seq41981 Length=230 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || ||||| | || || |||||||||||||| || Sbjct 226 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAA 167 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | || || |||||| |||||| ||| | || Sbjct 166 ATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAACATTC 107 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || |||| |||||||| ||||| |||| || || ||| Sbjct 106 TCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTCACA 47 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 46 AAAATTTGCAT 36 >seq381734 Length=9470 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| |||||||||||||| || || ||||| | || || ||||||||||| ||||| | Sbjct 43 CCTTCTGGATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGA 102 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| | ||||||||| | || | | |||||||| || ||| ||||| || Sbjct 103 TCAATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTCT 162 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| | ||||| || | |||||||| ||||| ||||| ||||| || | Sbjct 163 CGATTGTGTCAGATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCACGA 222 Query 46584 AGATTTGCATTTTG 46597 |||| |||||| || Sbjct 223 AGATCTGCATTCTG 236 >seq315868 Length=823 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || || || |||| || |||||||| || || || Sbjct 94 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCAAGCTGCTTACCAGCAAAG 153 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-T 46521 |||||||||||||| |||| || | | ||||||||| ||| || ||| || | Sbjct 154 ATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCC-TGAATTTTGGCTTTCACGTT 212 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | || || |||| |||||||||||||| ||||| || ||||| Sbjct 213 CTCAATTGTGTCCGAGGGCTCGACCTCCAGGGTGATGGTTTTGCCAGTCAGAGTCTTAAC 272 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 273 GAAGATCTGCAT 284 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| ||||| || | || || | ||||||||| ||||| Sbjct 549 CTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCTTCCAACTGCTTGCCAGCGAA 608 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| |||| || | || |||||||||| ||||| ||||| | Sbjct 609 AATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATT 668 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | || || |||| ||||| || || || ||||| || ||||| Sbjct 669 TTCAATGGTGTCAGAAGGCTCGACCTCCAAAGTGATAGTCTTTCCAGTCAGAGTCTTAAC 728 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 729 GAAGATCTGCAT 740 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || | | |||||| || | ||| |||||| || || || ||||| || Sbjct 286 CCTCCCCTCAACCTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGAG 345 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| |||| || |||||||| || || || || | |||||||| |||| || Sbjct 346 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 405 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||| | | | | ||||| | || || Sbjct 406 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACT 465 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || || || ||||| |||||||||||||| Sbjct 466 TCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCAT 512 >seq159778 Length=363 Score = 109 bits (120), Expect = 6e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| ||||| || | | ||||| |||||||| | || ||| |||||||| || | Sbjct 36 ATTAATTGCCACCACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATGTTAT 95 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 |||| || ||||| || | || || | ||||||||| || || || | |||||||||| Sbjct 96 AGTCAGACAGAGTACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGT 155 Query 46479 CGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCG 46538 ||| || | || ||||||||| |||||| ||| | || | | ||||| | Sbjct 156 CGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGG 215 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| |||||||| ||||| || || || || || || || ||||| Sbjct 216 GCTCGACCTCCAATGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq168520 Length=216 Score = 107 bits (118), Expect = 2e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||| ||||| |||||||| | || || ||||||||||||||||| Sbjct 6 CCTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAA 65 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||| || | || | || ||||||||| |||||| ||| | | Sbjct 66 ATAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTT 125 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || || | |||||||| || ||||| || ||||| || Sbjct 126 TCGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACG 185 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 186 AAGATCTGCAT 196 >seq75430 Length=261 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| ||||| || || || ||||| | || || ||||||||||| || || Sbjct 197 CTCTTTCTGGATGTTGTAATCAGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAA 138 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| ||||| | Sbjct 137 AATAAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTT 78 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | || || |||| |||||||| || || || || || ||||| Sbjct 77 CTCGATGGTATCTGAGGGCTCAACCTCCAAAGTGATGGTCTTTCCAGTAAGGGTCTTAAC 18 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 17 GAAGATCTGCATT 5 >seq104930 Length=294 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || ||||| |||| || |||||||| || || || Sbjct 177 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAG 236 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 |||||||||||||| |||| || | | ||||||||| |||||| Sbjct 237 ATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGGATCTT 283 >seq42666 Length=224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || ||||||||||||||||| || || | || || ||||||||||| || || Sbjct 134 CTCCTTCTGAATATTGTAGTCGGATAGGGTACGTCCATCTTCCAGCTGCTTGCCCGCAAA 193 Query 46462 TATCAAGCGCTGCTGGTC 46479 ||||||||||||||||| Sbjct 194 GATCAAGCGCTGCTGGTC 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562540340479800