Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq41980 125 7e-24 seq41981 122 9e-23 seq315868 120 3e-22 seq159778 118 1e-21 seq168520 107 2e-18 seq75430 105 7e-18 seq194953 95.1 1e-14 seq104930 84.2 2e-11 >seq41980 Length=230 Score = 125 bits (138), Expect = 7e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| |||||||| | || || ||| || || Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| | || |||| ||||| || || || || ||||||| Sbjct 96 GACACTATTGAGAACG-TTAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCA 154 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 155 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 214 Query 38423 CATCCAAAAGGAA 38435 |||||| |||||| Sbjct 215 CATCCAGAAGGAA 227 >seq41981 Length=230 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| |||||||| | || || ||| || || Sbjct 36 ATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCCTCC 95 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| | || |||| |||||||| || || || ||||||| Sbjct 96 GACACTATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCCGACCAG 155 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||||| || ||||| |||||||| || | |||||||| |||||||||| Sbjct 156 CAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 215 Query 38424 ATCCAAAAGGAA 38435 ||||| |||||| Sbjct 216 ATCCAGAAGGAA 227 >seq315868 Length=823 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||||||||||||| | || |||||| || | Sbjct 284 ATGCAGATCTTCGTTAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGCCCTCG 225 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||||| | ||||| || || || || |||| || Sbjct 224 GACACAATTGAGAACG-TGAAAGCCAAAATTCAGGACAAGGAAGGTATCCCTCCCGATCA 166 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || || ||||| || |||| || ||||| |||||||| Sbjct 165 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTTTCGGACTACAA 106 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || || || ||||| |||||| || | || || Sbjct 105 CATCCAGAAGGAATCCACCCTCCACTTGGTCCTGCGTCTGCGCGGTGG 58 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || ||||| | || |||||| | | Sbjct 740 ATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACTATCACTTTGGAGGTCGAGCCTTCT 681 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || || | ||||| ||||| || || |||| || Sbjct 680 GACACCATTGAAAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 621 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||| |||| || | || || || |||||||||| Sbjct 620 CAGCGTCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTGTCCGACTACAAC 561 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || |||||||| ||| || | || || Sbjct 560 ATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTGCGTGGTGG 514 >seq159778 Length=363 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| || | Sbjct 270 ATGCAGATTTTCGTCAAGACCCTCACAGGCAAGACCATCACATTGGAGGTCGAGCCCTCT 211 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| ||||||| Sbjct 210 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 152 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||| | || || | || || || ||||| || Sbjct 151 GCAGCGTCTCATCTTTGCTGGCAAGCAGTTAGAGGATGGTCGTACTCTGTCTGACTATAA 92 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || | || || ||| |||| |||||| || | || ||| Sbjct 91 CATCCAAAAAGAGTCCACTCTCCATCTGGTCCTGCGTCTGCGTGGTGGC 43 >seq168520 Length=216 Score = 107 bits (118), Expect = 2e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||||||||| |||||||| || |||||||| | || |||||| | | Sbjct 196 ATGCAGATCTTCGTAAAAACCCTCACGGGGAAGACCATCACACTTGAGGTCGAGCCTTCA 137 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| ||||| || || || ||| | || || Sbjct 136 GACACGATCGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAG 77 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||||| || || | ||||| ||| ||| |||||| Sbjct 76 CAGCGCCTTATTTTCGCCGGCAAGCAGCTAGAGGATGGACGCACTCTCTCCGATTACAAC 17 Query 38424 ATCCA-AAAGG 38433 || || ||||| Sbjct 16 ATTCAGAAAGG 6 >seq75430 Length=261 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || || |||||||| | || || ||| || | Sbjct 5 AATGCAGATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTTTGGAGGTTGAGCCCTC 64 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | || | || |||| ||||| |||||||| ||| | |||| Sbjct 65 AGATACCATCGAGAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACC 123 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || |||| || ||||| ||||| || || | |||||||| || |||| Sbjct 124 AGCAGCGTCTTATTTTTGCAGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGATTACA 183 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| || || | || || ||| | || || ||| || | || ||| Sbjct 184 ACATCCAGAAAGAGTCAACCCTCCATCTTGTTCTCCGTCTGCGCGGTGGC 233 >seq194953 Length=429 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 132712 AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTA 132771 || || ||||| |||||||| || |||||||||||||||||| ||| || || || Sbjct 405 AGTTCAACGAGGAGCCTGTCAGCAACGAACTCGATGTATTGCTTCATAAGATCACAGTTC 346 Query 132772 AGTCCCAGCA-GACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | || | || | |||| || || || || ||||| || |||||| |||| ||| || Sbjct 345 ATGCCAATCATGGCGCAA-GGAAGGGCGTCAGTGAGGAACTCTTGCTCAATGGTGACAGC 287 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACAT 132890 || | | ||| | |||| | | | | ||| ||||||| || |||||| Sbjct 286 ATCTGCAATGATCTTGGTAACTTCCTCTGGAGTTGGCTTCTGCACCAGGTGGCGGAACAT 227 Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 ||||||||||||||| ||||||| ||||| Sbjct 226 CAAGCAAGCAAAGTCACAATGCAGGCCCT 198 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || |||||||| || ||||||||||| || | |||||||| | || | || | Sbjct 139 CCTCATCTCTGGAAATAAGCTCGTTGCTGAAGGTGAGACCGGGCATCAAACCTCTCTTCT 80 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| || || ||||| || || || | || ||||| || || || | Sbjct 79 TCAGCCAGAAAATGGACGCAAAGCTGCCTGAGAAAAAAATCCCTTCGACTGCTGCAAAGG 20 Query 133037 CCACCAGGCGCTCGCCGAA 133055 | |||| | ||||||||| Sbjct 19 CAACCACTCTCTCGCCGAA 1 >seq104930 Length=294 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 |||| | || |||| ||||| || || || || |||| || ||||| | || | | Sbjct 291 TTAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTCCCGATCAGCAGCGCTTGATCTTTG 232 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | || || ||||| || |||| |||||||| |||||||||||||| |||||| | | Sbjct 231 CTGGTAAGCAGCTTGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAATCCA 172 Query 38440 CGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | || || ||||| |||||| || | || || Sbjct 171 CCCTCCACTTGGTCCTGCGTCTGCGCGGTGG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497785318921600