Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq316308 165 1e-35 seq380081 104 3e-17 seq323066 100 4e-16 seq323253 93.3 5e-14 seq60767 82.4 1e-10 >seq316308 Length=732 Score = 165 bits (182), Expect = 1e-35 Identities = 357/529 (67%), Gaps = 4/529 (1%) Strand=Plus/Plus Query 7271 GATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTC 7330 || || ||||| || | ||| ||||| || || ||||| || || | | || | | Sbjct 1 GAGGTGTAGAAGTCGATGCCCTCGTACAAGGAGTCAATCTCGATCGAGGCCTGGGTGGAG 60 Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390 || || | || |||||||| | |||||| || || || | |||||| || || | | | Sbjct 61 GAGGAAAGGGTGCGCTTTGCCCTCTCACAAGCGGTGCGCAGACGACGCAGTGCCCTCTTG 120 Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGAAGGAG 7449 || || | || ||||| | || || || ||||| | || | ||||| | | Sbjct 121 TTGGTGGTCAGGTCCTTCTTGTACTTGCGCTTGAACTCCTGCACA-AAGTGGTTGACCAT 179 Query 7450 TCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAA 7509 || ||||| || ||||| |||||||| || || || ||||| | ||||||||||| Sbjct 180 TCGGTTGTCGAAGTCCTCACCTCCCAAGTGAGTGTCTCCAGCGGTGGACTTGACTTCAAA 239 Query 7510 GATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAAT 7569 ||| || | || ||| | | | || ||||| || || ||||||||||| || ||||| Sbjct 240 GATGCCGTCCTCGATGGTGAGAATGGAGACATCGAAGGTGCCACCACCCAGATCGAAAAT 299 Query 7570 GAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGT 7629 ||| || | | | ||| | | ||||| || ||||| || || || || || || || Sbjct 300 GAGCACATGCCTCTCGCCCTGACCCTTCTTGTCAAGACCATAGGCAATGGCGGCAGCTGT 359 Query 7630 TGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 || || || || ||||| || ||| || || ||||| || || | | || || || | Sbjct 360 GGGCTCGTTGATGATACGGAGCACA-TTGAGACCAGCGATGGTGCCAGAGTCCTTGGTGG 418 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 | ||||| || ||||| |||||||| || || || | ||| |||| || || Sbjct 419 CCTGTCGCTGACTGTCGTTGAAGTAGGCGGGCACTGTGATGACGGCGTTGCCAACAGCCT 478 Query 7749 TACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 | || || || | || ||| | || ||||| ||| | || |||||||| Sbjct 479 TGCCAAGGTAAGCCTCGGCGGTCTCCTTCATCTTGATGAGCACCATCGA 527 >seq380081 Length=3541 Score = 104 bits (114), Expect = 3e-17 Identities = 195/282 (69%), Gaps = 5/282 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||||||| || || || ||| || || ||||| | || Sbjct 1712 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCATTGGTGGCCACCACCTCAAAAACGCC 1771 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || ||| | | || || || ||||| || || ||||||| ||||| | || || Sbjct 1772 ATTGTCGATGGTCAGCAGAGACACGTCAAAGGTGCCGCCACCCAAATCAAACACAAGCAC 1831 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 |||| | || || ||| ||||| || ||||| || || || || || || || || || Sbjct 1832 GTTCTTCTC-TC--CTTCCTTCTTGTCCAGACCATAAGCAATGGCGGCGGCGGTGGGCTC 1888 Query 7636 ATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || || | | ||| | |||||||| || ||| | ||||| || || || || | Sbjct 1889 GTTGATGATTCTCATGAC-CTGGAGGCCAGCGATGGTTCCAGCATCCTTAGTAGCCTGAC 1947 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | || | ||||| |||||||| || || || || || |||| Sbjct 1948 GCTGGGCGTCGTTGAAGTAGGCAGGCACAGTCACAACAGCGT 1989 >seq323066 Length=706 Score = 100 bits (110), Expect = 4e-16 Identities = 259/390 (66%), Gaps = 5/390 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 || || || || ||||| || | || ||||| || || ||||| || || | ||| ||| Sbjct 27 TTTTTGTCCAGTCCGTAGGCCAGGGCAGCCGCGGTGGGCTCATTGATGATTCTAAGTACA 86 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||||||||||| || | | || || || ||||| || | || | ||||| ||||| Sbjct 87 -TTCAGGCCAGCGATGGCACCAGCGTCCTTGGTCGCCTGCCTCTGAGCGTCGTTGAAGTA 145 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || ||||| || || || |||| || ||| | || | ||| | ||||||| | || Sbjct 146 TGCAGGGACGGTGACCACAGCGTTTGTAACTGTGGCTCCCAAATAAGCTTCCGCGGTCTC 205 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 |||||||| | |||||||| || |||||||| | ||| | || | || || Sbjct 206 CTTCATTTTCGCCAGAACCATGGAGCTGATCTCTTCGGGGTTGAACCGCTTGGACTCGCC 265 Query 7834 GTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCA 7893 ||||| || || || | | || || || | | || || ||| | | | ||| Sbjct 266 CTTAAACTCGACCTCCAGTTTTGGCTT-GCCTC--CCTCGCTAATGACCGTGAATGGCCA 322 Query 7894 ATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGC 7953 | ||||| ||| |||||| | |||| || | ||||| | ||||| || Sbjct 323 GTGCTTCATGTCGGCTTGGATTTTGGGGTCATCGAAGCGGCGGCCGATCAATCGCTTAGC 382 Query 7954 ATCAAAAACTGTGTTTTTGGGGTTCATGGC 7983 ||||| || ||||| || ||||||||||| Sbjct 383 GTCAAACACAGTGTTCTTTGGGTTCATGGC 412 >seq323253 Length=706 Score = 93.3 bits (102), Expect = 5e-14 Identities = 254/384 (66%), Gaps = 5/384 (1%) Strand=Plus/Minus Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAG 7659 || || ||||| || | || ||||| ||||| ||||| || || | ||| ||| ||||| Sbjct 705 TCCAGTCCGTAGGCCAGGGCAGCCGCGGTTGGCTCATTGATGATTCTAAGTACA-TTCAG 647 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 |||||| || | | || || || ||||| || | || | ||||| ||||| || || Sbjct 646 GCCAGCGATGGCACCAGCGTCCTTGGTCGCCTGCCTCTGAGCGTCGTTGAAGTAAGCAGG 587 Query 7720 GACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 ||| ||||| || |||| || ||| | || | ||| | ||| ||| | || ||||| Sbjct 586 GACGGTTACCACAGCGTTTGTAACTGTGGCTCCCAAATAAGCTTCTGCGGTCTCCTTCAT 527 Query 7780 TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAA 7839 ||| | | ||||| || |||||||| | ||| | || | || || ||||| Sbjct 526 TTTCGCCAACACCATGGAGCTGATCTCTTCGGGGTTGAACCGCTTGGACTCGCCCTTAAA 467 Query 7840 ATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTT 7899 ||||| || | | || || || | | || || ||| | | | ||| | || Sbjct 466 CTCAACCTCCAGTTTTGGCTT-GCCTC--CCTCGCTAATGACCGTGAATGGCCAGTGCTT 410 Query 7900 CATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAA 7959 ||| ||| |||||| | |||| | | ||||| | ||||| || ||||| Sbjct 409 CATGTCGGCTTGGATTTTGGGGTCATCGTAGCGGCGGCCGATCAATCGCTTAGCGTCAAA 350 Query 7960 AACTGTGTTTTTGGGGTTCATGGC 7983 || ||||| || ||||||||||| Sbjct 349 CACAGTGTTCTTTGGGTTCATGGC 326 >seq60767 Length=246 Score = 82.4 bits (90), Expect = 1e-10 Identities = 137/195 (70%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||||| ||||| |||||||||||||| ||||||||| || ||||| || || |||| Sbjct 229 CAAAAATAGTGTTGTTGGGGTTCATGGCCACTTGGTTCTTTGCTGCGTCTCCAATCAGAC 170 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTC 8074 | || | | || || || || || || | |||| || || | || || || ||||| Sbjct 169 GCTC---AGTCTCAGTGAAGGCTACATA-GCTGGGCGTAGTCCTGTTACCCTGATCGTTG 114 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 |||| ||| || || | | | || |||| || || ||||| || || || || | Sbjct 113 GCAACAATCTCCACCTTGCCATGCTGGAAGACTCCCACACACGAGTATGTGGTGCCCAGG 54 Query 8135 TCAATACCGATTGCT 8149 ||||| || | |||| Sbjct 53 TCAATTCCTACTGCT 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632101112666600