Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq381734 143 6e-29 seq315868 143 6e-29 seq159778 134 3e-26 seq168520 122 2e-22 seq41980 122 2e-22 seq75430 120 7e-22 seq41981 118 2e-21 >seq381734 Length=9470 Score = 143 bits (158), Expect = 6e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || |||||||| || | || || | |||||||| |||||||| || |||||||| Sbjct 45 TTCTGGATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATC 104 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || || ||||| |||||||| ||||| |||||||||||||| |||||| ||||| Sbjct 105 AATCTCTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTCTCG 164 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 || ||||| || ||||| |||||||| | ||||| || |||| ||||| ||||| Sbjct 165 ATTGTGTCAGATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCACGAAG 224 Query 195133 ACTTGCATT 195141 | |||||| Sbjct 225 ATCTGCATT 233 >seq315868 Length=823 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || ||||| ||||| |||| ||||| | |||||||| | ||| Sbjct 537 GTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCTTCCAACTG 596 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || || || || || ||||| ||||| || ||||| ||||| || Sbjct 597 CTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGAATCTT 656 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || ||||||||||| ||| || || || | || | |||||||| || Sbjct 657 AGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACCTCCAAAGTGATAGTCTTTCCAGT 716 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||| || ||||| | ||||| Sbjct 717 CAGAGTCTTAACGAAGATCTGCAT 740 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||| || | ||| || | || || || ||||| Sbjct 81 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCAAGCTG 140 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | || || || || ||||| || ||||| ||||| |||||||| Sbjct 141 CTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGAATTTT 200 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || ||||||||||| |||||||| || || || ||||| | || || || || Sbjct 201 GGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGACCTCCAGGGTGATGGTTTTGCCAGT 260 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||| || ||||| | ||||| Sbjct 261 CAGAGTCTTAACGAAGATCTGCAT 284 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||| || || || | ||||| | || || || Sbjct 304 ACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGAGAGAGTGCGGCCGTCCTCA 363 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || || || ||||| || || || |||||||| Sbjct 364 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGGATTCCCTCCTTGTCTTGG 423 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || ||||| ||||| || || |||||||| || | |||||| Sbjct 424 ATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACTTCAAGTGTGATGGTCTTT 483 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || || | |||||| Sbjct 484 CCTGTGAGGGTTTTGACAAAGATTTGCAT 512 >seq159778 Length=363 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||||||||||||||| || || || || | ||||| | ||||| || Sbjct 62 ACCAGATGGAGAGTGGACTCTTTTTGGATGTTATAGTCAGACAGAGTACGACCATCCTCT 121 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| || || || ||||| |||||||||||||| ||||| || Sbjct 122 AACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 181 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||||||||| || || || || | || | ||||| Sbjct 182 ATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACCTCCAATGTGATGGTCTTG 241 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || ||||| | ||||| Sbjct 242 CCTGTGAGGGTCTTGACGAAAATCTGCAT 270 >seq168520 Length=216 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| ||||| |||||||||| ||||| | ||||| || |||||||| || ||||| | Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 |||| || || || || || || |||||||| ||||| || || || ||| || || | Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | || ||||| ||| || || ||||| || | ||||| || || | |||||||||| Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 187 AGATCTGCAT 196 >seq41980 Length=230 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 194946 GGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGC 195005 ||| || || || || ||||| |||| || || | |||||||| |||||||| || || Sbjct 230 GGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGC 171 Query 195006 GAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGAC 195065 ||| || || || || ||||| ||||| |||||||| ||||| || || || ||| || Sbjct 170 GAAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAAC 111 Query 195066 GTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTT 195125 ||||||||| ||||| || || || || | || | ||||| || |||||||| || Sbjct 110 GTTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTT 51 Query 195126 TACGAACACTTGCAT 195140 || || | |||||| Sbjct 50 CACAAAAATTTGCAT 36 >seq75430 Length=261 Score = 120 bits (132), Expect = 7e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| || || || |||||||| || || |||||||| | || || | ||||| || Sbjct 215 AACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGGCCATCCTC 156 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| ||||| || ||||| || || ||||| || || || || || ||||| || Sbjct 155 AAGCTGCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 96 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||||||||| ||||| || || || || || | || | ||||| Sbjct 95 GATCTTAGCCTTGACGTTCTCGATGGTATCTGAGGGCTCAACCTCCAAAGTGATGGTCTT 36 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || | || || ||||| | |||||| Sbjct 35 TCCAGTAAGGGTCTTAACGAAGATCTGCATT 5 >seq41981 Length=230 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 194946 GGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGC 195005 ||| || || || || ||||| |||| || || | |||||||| |||||||| || || Sbjct 230 GGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGC 171 Query 195006 GAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGAC 195065 || || || || || ||||| ||||| |||||||||||||| || || || ||| || Sbjct 170 AAAAATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAAC 111 Query 195066 GTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTT 195125 |||||||| ||||| || || || || | || | ||||| || |||||||| || Sbjct 110 ATTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTT 51 Query 195126 TACGAACACTTGCAT 195140 || || | |||||| Sbjct 50 CACAAAAATTTGCAT 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1104053300050455