Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq315868 114 8e-21 seq75430 96.9 2e-15 seq41980 89.7 3e-13 seq41981 87.8 1e-12 seq168520 82.4 5e-11 >seq315868 Length=823 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||||||| | |||| ||| | ||| || ||||||||||||||||| || Sbjct 286 CCTCCCCTCAACCTGAGCACCAGGTGGAGTGTCGACTCCTTCTGAATGTTATAGTCTGAG 345 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || || ||||| ||||| ||||| || || || ||||| || | || Sbjct 346 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGAGGG 405 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| || || | | || | || || |||||| Sbjct 406 ATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCTGAGGGCTCAACT 465 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||| ||||| ||||| || || |||||||| |||||| Sbjct 466 TCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTGCATA 513 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| |||||||||||| | || | || || Sbjct 76 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCA 135 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | || ||||| || | || | || |||||||| | Sbjct 136 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTGTCCTGA 195 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||| ||| | || | || || ||| || || | ||| |||||||| Sbjct 196 ATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGACCTCCAGGGTGATGGTTTTG 255 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || |||||||| || |||||||||||| Sbjct 256 CCAGTCAGAGTCTTAACGAAGATCTGCATA 285 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||||||||| ||||| || || | || |||| ||| Sbjct 532 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCTTCC 591 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || || || || || || ||||| || | || | ||||||||||| | Sbjct 592 AACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGA 651 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | ||| | ||| || || | || || || ||| Sbjct 652 ATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACCTCCAAAGTGATAGTCTTT 711 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || |||||||| || ||||||||||| Sbjct 712 CCAGTCAGAGTCTTAACGAAGATCTGCAT 740 >seq75430 Length=261 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || || ||| | || |||| || ||||| || || ||||| Sbjct 196 TCTTTCTGGATGTTGTAATCAGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAAA 137 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||||| |||||| Sbjct 136 ATAAGACGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTC 77 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || |||||| || | || ||||| ||||| || || ||||| || Sbjct 76 TCGATGGTATCTGAGGGCTCAACCTCCAAAGTGATGGTCTTTCCAGTAAGGGTCTTAACG 17 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 16 AAGATCTGCAT 6 >seq41980 Length=230 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || ||||| || Sbjct 227 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 168 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || |||||||| ||||| || ||| Sbjct 167 AATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAACGTT 108 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || || |||||| || | || ||||| || || || | ||||||||| Sbjct 107 CTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCAC 48 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 47 AAAAATTTGCAT 36 >seq41981 Length=230 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 227 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 168 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || || ||||| ||||| || || | Sbjct 167 AATGAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCCTTAAC--A 110 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | || || |||||| || | || ||||| || || || | ||||||| Sbjct 109 TTCTCAATAGTGTCGGAGGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTC 50 Query 34968 ACAAAGATCTGCAT 34981 ||||| || ||||| Sbjct 49 ACAAAAATTTGCAT 36 >seq168520 Length=216 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||||||||| || || || || | ||| |||| || ||||| || ||||| || | Sbjct 7 CTTTCTGAATGTTGTAATCGGAGAGAGTGCGTCCATCCTCTAGCTGCTTGCCGGCGAAAA 66 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | || || ||||| || | || | || |||||||| ||||| || || | Sbjct 67 TAAGGCGCTGCTGATCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTTT 126 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | |||| || | ||| || || | || ||||| || |||||||| || || || | Sbjct 127 CGATCGTGTCTGAAGGCTCGACCTCAAGTGTGATGGTCTTCCCCGTGAGGGTTTTTACGA 186 Query 34972 AGATCTGCAT 34981 |||||||||| Sbjct 187 AGATCTGCAT 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323122761819720