Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq75430 98.7 8e-15 seq381734 89.7 4e-12 >seq75430 Length=261 Score = 98.7 bits (108), Expect = 8e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| |||||||| ||||| ||| | | ||| || |||||||||| || || | Sbjct 223 AGACGGAGAACAAGATGGAGGGTTGACTCTTTCTGG--ATGTTGTAATCAGACAGGGTGC 166 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| ||||| || || || ||||||||||| | ||||| ||||| || ||||| | Sbjct 165 GGCCATCCTCAAGCTGCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGGGGGGATTCCCT 106 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 | || || || || || || || ||| || ||||| | | | | || | || Sbjct 105 CCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCTGAGGGCTCAACCTCCAAAG 46 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || |||||||| || |||||||| || ||||| Sbjct 45 TGATGGTCTTTCCAGTAAGGGTCTTAACGAAGATCTGCAT 6 >seq381734 Length=9470 Score = 89.7 bits (98), Expect = 4e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 |||||||| |||| || || | |||||| || || || || || || || | ||| Sbjct 51 ATATTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAATCTC 110 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| ||||||||||| ||||| || ||||||||||| || || ||| ||||| Sbjct 111 TGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTGACATTCTCGATTGTG 170 Query 563413 TCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 |||| || | || || || || | || || ||||| || ||||| ||||| || || Sbjct 171 TCAG-ATGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTCACGAAGATCTG 229 Query 563472 CAT 563474 ||| Sbjct 230 CAT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4009101256588850