Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq298802 122 2e-22 seq303592 114 2e-20 seq6450 111 3e-19 seq6449 111 3e-19 seq347318 107 4e-18 >seq298802 Length=733 Score = 122 bits (134), Expect = 2e-22 Identities = 174/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 212896 TGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGT 212955 ||| ||||||| ||||||| | ||||| || || |||||||| | | ||| | || Sbjct 377 TGAGCAGGTGATGGTTGACAACTTGGAATTCTCCAGAGAGCACACGGCGGGTGTAGATGT 436 Query 212956 TTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGG 213015 | || ||||| ||||| |||||||||||||| || || ||||| |||||| ||| || | Sbjct 437 TGGAGGTGTATGGCTCAATGCTCTCGTTGTTGCCGAGGATCTGAGCAGTGGAGGCGGTTG 496 Query 213016 GCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCT 213075 |||||||||||||||| || ||| | || ||||||| ||| || |||| Sbjct 497 GCATGGGAGCCACCAGCAGGGAGTTGCGGACGCCGTGCTGCTTGATCTTCTCGCGCAGCT 556 Query 213076 CTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCA 213135 | | ||||| ||| ||| ||| | || | || ||||||||||||||||| Sbjct 557 CAGGCCAGTTCCA-----CAGCTTGGTGC-CGGGATCAACACCCCACATGTCAAACTGCA 610 Query 213136 AGAT 213139 |||| Sbjct 611 AGAT 614 >seq303592 Length=754 Score = 114 bits (126), Expect = 2e-20 Identities = 145/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 212859 ATGTCCTCGTTCCAGAGGCCCCTGGTCTC-CAGGCACTTGACCAGGTGAGGGTTGACTAT 212917 ||| | || ||||| |||||| || || |||| ||| ||||||| ||||||| | Sbjct 402 ATGCCATCATTCCACAGGCCC-TGCTCGGTCAGGTCTCTGAGCAGGTGATGGTTGACAAC 344 Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||||| || || || ||||| | | ||| | ||| || ||||| ||||| ||||| Sbjct 343 TTGGAATTCTCCAGAAAGCACACGGCGGGTGTAGATGTTGGAGGTGTATGGCTCAATGCT 284 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| || || ||||| |||||| ||| || ||||||||||| ||||| || Sbjct 283 CTCGTTGTTGCCGAGGATCTGAGCAGTGGAGGCAGTTGGCATGGGAGCAACCAGCAGGGA 224 Query 213038 GTTCCTCACTCCGTGCT 213054 ||| | || ||||||| Sbjct 223 GTTGCGGACGCCGTGCT 207 >seq6450 Length=203 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||||||||| | || || || ||||||||||| || ||||| |||||| || Sbjct 149 GTACATCTCAGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAGAAACACCTGGCTTC 90 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 || |||||||| | |||||| || | |||||||||||| || || ||||| || Sbjct 89 GGTGACTTGCACTTCCTGGCTGAATCTTTCAACCAGATTCTCATTCACAATTCCATCAGA 30 Query 48544 AGCAGCAAAGAAGGCAAGGACATG 48567 || |||||||||||||| || || Sbjct 29 GGCGGCAAAGAAGGCAAGCACGTG 6 >seq6449 Length=203 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| |||||||| | || || || ||||||||||| || ||||| |||||| || Sbjct 149 GTACATTTCAGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAGAAACACCTGGCTTC 90 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 || |||||||| | ||||||||| | |||||||||||| || || ||||| || Sbjct 89 GGTGACTTGCACTTCCTGGCTGAATCTCTCAACCAGATTCTCATTCACAATTCCATCAGA 30 Query 48544 AGCAGCAAAGAAGGCAAGGACATG 48567 || |||||||||||||| || || Sbjct 29 GGCGGCAAAGAAGGCAAGCACGTG 6 >seq347318 Length=1073 Score = 107 bits (118), Expect = 4e-18 Identities = 174/248 (70%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 213994 TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATAT 214053 ||||| ||| || || | ||| || || || ||||| ||| ||||| || || || | Sbjct 1035 TGTTGTAGACTCGGAGCATGGGCACAAGGCCATTGGATATTCCATTGGTGCCAGCAATGT 976 Query 214054 ACGAGCCGGAGGCCCTCAGGTTGCTCATGGA----GAGCCCTATGCCACCGGCGTACTTG 214109 | | ||| ||||| | || ||| ||||| || || |||||||| || ||||| Sbjct 975 ATGTGCCAGAGGCAC---GGATGCA-ATGGACATTGACGCCAATGCCACCTGCAGACTTG 920 Query 214110 GAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGG 214169 ||||| | |||||| || ||| ||| || |||||| | ||||||||||| | | | Sbjct 919 GAGATGAGGGCGCACTGCTTCAGAGTGTCGTAGATGCCCTCAATGCTGTCATCCTTCATG 860 Query 214170 TTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGG 214229 | |||| |||||| || ||||| || || || | | ||| |||||| || |||||| Sbjct 859 GTTAGCAGGAAGCAACTTGAGAGTTGAGGTTTGACGGTGGCAGCGTTGAACAGGGTGGGG 800 Query 214230 CTGGCATG 214237 |||||| Sbjct 799 GAGGCATG 792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927086302841600