Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6450 125 1e-23 seq6449 125 1e-23 seq298802 123 5e-23 seq303592 109 1e-18 >seq6450 Length=203 Score = 125 bits (138), Expect = 1e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || |||||||| ||||||||||| || ||||| ||||||||| || |||| Sbjct 7 ACGTGCTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAAAGAT 66 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| | ||||||||| | || |||| ||||||||| || |||||||| ||||||| Sbjct 67 TCAGCCAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATCG 126 Query 25715 AAAATGTGCACTCTGAGGTGTA 25736 |||| | ||||||||| |||| Sbjct 127 AAAACATCCACTCTGAGATGTA 148 >seq6449 Length=203 Score = 125 bits (138), Expect = 1e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || |||||||| ||||||||||| || ||||| ||||||||| ||||||| Sbjct 7 ACGTGCTTGCCTTCTTTGCCGCCTCTGATGGAATTGTGAATGAGAATCTGGTTGAGAGAT 66 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| | ||||||||| | || |||| ||||||||| || |||||||| ||||||| Sbjct 67 TCAGCCAGGAAGTGCAAGTCACCGAAGCCAGGTGTTTCTATGGCTTCCAGATCGCCATCG 126 Query 25715 AAAATGTGCACTCTGAGGTGTA 25736 |||| | |||||||| |||| Sbjct 127 AAAACATCCACTCTGAAATGTA 148 >seq298802 Length=733 Score = 123 bits (136), Expect = 5e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 221103 TGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGT 221162 ||| || ||| | ||| || |||||||| ||||| |||||||| | | ||| | || Sbjct 377 TGAGCAGGTGATGGTTGACAACTTGGAATTCTCCAGAGAGCACACGGCGGGTGTAGATGT 436 Query 221163 TAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGG 221222 | || ||| | || || ||||||||||||||||| ||||||||||| ||| |||||| | Sbjct 437 TGGAGGTGTATGGCTCAATGCTCTCGTTGTTGCCGAGGATCTGAGCAGTGGAGGCGGTTG 496 Query 221223 GCATGGGTGCCACCAGCAGACTGTTGCG 221250 ||||||| ||||||||||| |||||| Sbjct 497 GCATGGGAGCCACCAGCAGGGAGTTGCG 524 >seq303592 Length=754 Score = 109 bits (120), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 221103 TGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGT 221162 ||| || ||| | ||| || |||||||| ||||| || ||||| | | ||| | || Sbjct 365 TGAGCAGGTGATGGTTGACAACTTGGAATTCTCCAGAAAGCACACGGCGGGTGTAGATGT 306 Query 221163 TAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGG 221222 | || ||| | || || ||||||||||||||||| ||||||||||| ||| ||| || | Sbjct 305 TGGAGGTGTATGGCTCAATGCTCTCGTTGTTGCCGAGGATCTGAGCAGTGGAGGCAGTTG 246 Query 221223 GCATGGGTGCCACCAGCAGACTGTTGCG 221250 ||||||| || |||||||| |||||| Sbjct 245 GCATGGGAGCAACCAGCAGGGAGTTGCG 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 924411133505600