Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq315868 105 4e-17 seq75430 104 2e-16 seq159778 91.5 1e-12 >seq315868 Length=823 Score = 105 bits (116), Expect = 4e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| || | ||||| | | || ||||| |||||||||||||| || ||||| || Sbjct 334 TTATAGTCTGAGAGAGTGCGGCCGTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGC 393 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| ||||| ||||| ||||||||||| ||||| || ||| |||||| || || Sbjct 394 TGATCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTTTCAATTGTGTCT 453 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | |||||| || || || || || ||||| || || || || ||||| Sbjct 454 GAGGGCTCAACTTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAGATTTG 509 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| || || || || || || || | ||||| Sbjct 519 ACGCAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 578 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| ||||| ||||| ||||| || ||||| ||||| || || Sbjct 579 ACGACCATCTTCCAACTGCTTGCCAGCGAAAATCAGACGCTGCTGATCGGGAGGGATGCC 638 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAA 480729 |||||||| |||||||| |||||| |||||| || |||| | | | | ||| Sbjct 639 CTCCTTGTCCTGAATCTTAGCCTTGACATTTTCAATGGTGTCAGAAGGCTCGACCTCCAA 698 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | ||||| || || || |||||||||||||| || || Sbjct 699 AG-TGATAGTCTTTCCAGTCAGAGTCTTAACGAAGATCTG 737 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||| ||||| |||||||| || | || || ||||| ||||| || ||||||||| Sbjct 130 TCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGATCGGGAGGGATACCTTCCTTG 189 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || ||||| || ||| || ||||| || || | | | || ||||| || Sbjct 190 TCCTGAATTTTGGCTTTCACGTTCTCAATTGTGTCCGAGGGCTCGACCTCCAGGGTGATG 249 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || |||||||||||||| || || Sbjct 250 GTTTTGCCAGTCAGAGTCTTAACGAAGATCTG 281 >seq75430 Length=261 Score = 104 bits (114), Expect = 2e-16 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| |||||||| || || ||||| | || ||||||| || || Sbjct 226 CGCAGACGGAGAACAAGATGGAGGGTTGACTCTTTCTGGATGTTGTAATCAGACAGGGTG 167 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||| ||||| ||||| || |||||||||||||| || || ||||| || ||||| Sbjct 166 CGGCCATCCTCAAGCTGCTTGCCTGCAAAAATAAGACGCTGCTGGTCAGGGGGGATTCCC 107 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAG 480730 |||||||| || ||||| ||||| || || ||||| | | | | || | ||| Sbjct 106 TCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTATCTGAGGGCTCAACCTCCAA- 48 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || || ||||||||||| || || Sbjct 47 AGTGATGGTCTTTCCAGTAAGGGTCTTAACGAAGATCTG 9 >seq159778 Length=363 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| ||||| || || ||||| || || ||| | ||| || ||||| |||| ||| Sbjct 49 ACGCAGACGCAGGACCAGATGGAGAGTGGACTCTTTTTGGATG--TTATAGTCAGACAGA 106 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | ||| || | ||||| |||||||| || ||||| || || || |||||||| Sbjct 107 GTACGACCATCCTCTAACTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGAGGAATG 166 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTC 480727 ||||||||||| || ||||| || || ||||| || |||| | | | | | | Sbjct 167 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAGGGCTCGACCTCC 226 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| ||||| |||||||| || Sbjct 227 AA-TGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATCTG 267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3251799157341020