Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq152148 87.8 5e-12 seq82250 86.0 2e-11 >seq152148 Length=356 Score = 87.8 bits (96), Expect = 5e-12 Identities = 186/271 (69%), Gaps = 10/271 (4%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 ||||| |||||| | ||||||||| || || || || | || || ||| | ||| Sbjct 73 TCCATGGCCTTGATGAGACGACGCTGGATGTATCCCGTCTCGGCAGTCTTCACAACAGTA 132 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCC 302692 | ||| |||| | | || |||| || |||||| | | ||| || ||| |||| Sbjct 133 TTAATGAGACTTTCTCTGCCTGCCATGGCGTGGAAGTAGAACTCAGAGGG-CGTCAAGCC 191 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGG 302749 ||| | | || |||| ||||| || | | |||||| || ||||||| |||| Sbjct 192 GGCCAGGTACG-AGTTCTCGACGAAGCCCCTTGACTCGGGGCCGTAATCGTC---CTTGA 247 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | ||||| || |||||||| || | |||| |||| || |||||||| || ||||||| Sbjct 248 TGAAGTGGGGGAGGGTCCTCTTGTGGAAGCCAAATGGAATTCGCTTTCCCTCCACGTTCT 307 Query 302810 GCTGTCCCAGGCACGAAATCATCTGCGAAAT 302840 |||| |||| ||| | || | ||| || || Sbjct 308 GCTGACCCACGCAAGCGATGACCTGAGAGAT 338 >seq82250 Length=268 Score = 86.0 bits (94), Expect = 2e-11 Identities = 159/228 (70%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || ||||| || |||||||| ||||| | | || ||||| || |||||| | | ||| Sbjct 265 GTCTTTACGGCAGTATCAATGAGACCTTCTCTGCCTCCCATGGCGTGGAAGTAGAACTCG 206 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-A 302735 || ||| || || | | | ||| |||| ||||| || | | ||| || || | Sbjct 205 GAGGG-CGTCAGGCCGGCCAGGTAAGAGTTCTCGACGAAGCCCCTTGACTCAGGACCGTA 147 Query 302736 ATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTT 302795 |||||| |||| | ||||| || |||||||| || |||| | || || ||||| Sbjct 146 ATCGTC---CTTGATGAAGTGGGGGAGGGTCCTCTTGCGGAAGCCAAACGGAATTCGCTT 90 Query 302796 TCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| || ||||||||||| |||| ||| | ||| | ||| || || || Sbjct 89 TCCCTCCACGTTCTGCTGACCCACGCAAGCAATGACCTGAGAGATGTT 42 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1464616518518505