Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq347318 141 1e-27 seq298802 120 4e-21 seq254643 109 7e-18 seq303592 105 8e-17 seq380336 95.1 1e-13 seq33215 87.8 2e-11 >seq347318 Length=1073 Score = 141 bits (156), Expect = 1e-27 Identities = 186/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || ||||| || |||| ||| |||| |||||||||||||| ||||| ||||| Sbjct 1058 CTGGTCAACATAGCGGGCGGTGTTGTTGTAGACTCGGAGCATGGGCACAAGGCCATTGGA 999 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || |||||||| || | ||| | ||| | ||| || | || | | ||| Sbjct 998 TATTCCATTGGTGCCAGCAATGTATGTGCCAGAGGCACGGATGCAATGGACATTGACGCC 939 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||||| || || |||||||||||||| |||||||| || || ||||||||||||||||| Sbjct 938 AATGCCACCTGCAGACTTGGAGATGAGGGCGCACTGCTTCAGAGTGTCGTAGATGCCCTC 879 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||| | || ||||| ||| ||| || | | ||| | Sbjct 878 AATGCTGTCATCCTTCATGGTTAGCAGGAAGCAACTTGAGAGTTGAGGTTTGACGGTGGC 819 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 |||||||| || ||||| Sbjct 818 AGCGTTGAACAGGGTGGG 801 >seq298802 Length=733 Score = 120 bits (132), Expect = 4e-21 Identities = 165/223 (74%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 |||||||||| || | ||||| ||| |||||| ||||||| || || || | Sbjct 350 TCCACAGGCCTTGCTCAGTCAGGTCTCTGAGCAGGTGATGGTTGACAACTTGGAATTCTC 409 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATGACCTCGCACGC-CTCGGTGTT 1627412 | |||||||| ||||| |||||||||||| |||| ||| ||| | || |||| |||| Sbjct 410 CAGAGAGCACACGGCGGGTGTAGATGTTGGAGGTGTATG-GCTC-AATGCTCTCGTTGTT 467 Query 1627413 GCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAG 1627472 ||| |||||||| | || | ||| || |||||| | ||||| || || |||||||| | Sbjct 468 GCCGAGGATCTGAGCAGTGGAGGCGGTTGGCATGGGAGCCACCAGCAGGGAGTTGCGGAC 527 Query 1627473 GCCGTGCTG-TCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCA 1627514 ||||||||| | || || | |||||||| | ||||| ||| Sbjct 528 GCCGTGCTGCTTGATCT-TCTCGCGCAGCTCAGGCCAGTTCCA 569 >seq254643 Length=570 Score = 109 bits (120), Expect = 7e-18 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 92616 GTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAA-AACATGTCGACGATGCGCGGGATCTT 92674 ||||| |||||||||||| | || | ||| || || ||||||||||| | | ||| Sbjct 314 GTGAGACGCTCCTGCACCTGTA-GCCGCCGGCTGAAAATCTCGACGATGCGAGCCAACTT 256 Query 92675 GCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGC-CTTGCCCATA-AAG 92732 ||| ||||||| ||| | | ||||||| ||||| | ||| | ||| || || ||| Sbjct 255 GCTGAGGCCGAGGATTTTCTTCTTGGGCAGATAGCCGA--TGGACACTTTGCCGTAGAAG 198 Query 92733 GGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACGATCACCATCTCG 92792 |||| ||| |||||||||||||||||||| | |||| ||| ||| | |||||||||| Sbjct 197 GGCACCAGGTGGTGCTCGCACATGGAGAACATCTCGATGTCTTTCACCACCACCATCTCG 138 Query 92793 CCCGAGGCCTCGGCAAAGAGCGCGTCG 92819 | | ||||| | || | |||||| Sbjct 137 TCGTGGTCCTCGTCGAACACGGCGTCG 111 >seq303592 Length=754 Score = 105 bits (116), Expect = 8e-17 Identities = 140/189 (74%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 |||||||||| || | ||||| ||| |||||| ||||||| || || || | Sbjct 392 TCCACAGGCCCTGCTCGGTCAGGTCTCTGAGCAGGTGATGGTTGACAACTTGGAATTCTC 333 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATGACCTCGCACGC-CTCGGTGTT 1627412 | || ||||| ||||| |||||||||||| |||| ||| ||| | || |||| |||| Sbjct 332 CAGAAAGCACACGGCGGGTGTAGATGTTGGAGGTGTATG-GCTC-AATGCTCTCGTTGTT 275 Query 1627413 GCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAG 1627472 ||| |||||||| | || | ||| || |||||| | || || || || |||||||| | Sbjct 274 GCCGAGGATCTGAGCAGTGGAGGCAGTTGGCATGGGAGCAACCAGCAGGGAGTTGCGGAC 215 Query 1627473 GCCGTGCTG 1627481 ||||||||| Sbjct 214 GCCGTGCTG 206 >seq380336 Length=3731 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||| | ||||| || || || ||| | |||||| |||| |||||| Sbjct 1965 GCTGCTAACTACTTGGACATTAAAGGCCTTCTTGATGTGACTTGCAAGACTGTCGCCAAC 1906 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||| | || ||||||||||| ||||| || ||||||||| ||| Sbjct 1905 ATGATCAAGGGCAAGACCCCAGAGGAGATCCGTAAGACTTTCAACATCAAGAACG 1851 >seq33215 Length=224 Score = 87.8 bits (96), Expect = 2e-11 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 507638 AACCGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCACAAGGTG---GTGCCCATG 507694 |||||||||||| || |||||| | ||| | ||||| |||| |||| || Sbjct 215 AACCGGCAGCCGACGTTGCACAAGATGAGTATGATGGGGCACAGGGTGAAGGTGC---TG 159 Query 507695 CCCGGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGAC 507754 || || |||| | || | ||||| | ||||| ||||||| ||||| |||||| Sbjct 158 CCGTGGTCCACCTTCCGCATGAACCTCTCTGTCACATCGCCCTACAATGCCGATTTTGAC 99 Query 507755 GGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGT 507807 ||||||||||||||| ||||||| || |||||| | | || | |||||||| Sbjct 98 GGCGACGAGATGAACTTGCACGTTCCTCAGTCCATGGAGACGAGGGCCGAGGT 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6075801569826205