Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Baetis_20rhodani_20[genbank_20GCA_5F001676355.1_202016-06-24] 381,865 sequences; 174,117,300 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq315868 149 6e-31 seq104930 109 5e-19 seq41981 104 2e-17 seq168520 89.7 5e-13 seq75430 87.8 2e-12 seq381734 86.0 6e-12 >seq315868 Length=823 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || || || || || || ||||| || || | Sbjct 512 ATGCAAATCTTTGTCAAAACCCTCACAGGAAAGACCATCACACTTGAAGTTGAGCCCTCA 453 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || |||||||||||||| || ||||| ||||||||||| Sbjct 452 GACACAATTGAAAATGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGATCAG 393 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| ||||| | | | ||||| |||||| Sbjct 392 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACTCTCTCAGACTATAAC 333 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| |||||||| ||| ||||| | | ||| | ||||| Sbjct 332 ATTCAGAAGGAGTCGACACTCCACCTGGTGCTCAGGTTGAGGGGAGG 286 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || ||||| || || || || || || || | Sbjct 284 ATGCAGATCTTCGTTAAGACTCTGACTGGCAAAACCATCACCCTGGAGGTCGAGCCCTCG 225 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| ||| | ||| || || ||||| ||||| || ||||||||||| Sbjct 224 GACACAATTGAGAACGTGAAAGCCAAA-ATTCAGGACAAGGAAGGTATCCCTCCCGATCA 166 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||||||| || || ||||| ||||| | | | | || || || || Sbjct 165 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGTACCCTTTCGGACTACAA 106 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || |||||||| || || |||||||| |||| ||||||| || Sbjct 105 CATCCAGAAGGAATCCACCCTCCACTTGGTCCTGCGTCTGCGCGGTGG 58 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || ||||| || | || || || | | Sbjct 740 ATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACTATCACTTTGGAGGTCGAGCCTTCT 681 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||| || ||||| || || || ||||||||||| Sbjct 680 GACACCATTGAAAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 621 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || ||| |||| ||| | | |||| || || ||| Sbjct 620 CAGCGTCTGATTTTCGCTGGCAAGCAGTTGGAAGATGGTCGTACTCTGTCCGACTACAAC 561 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||||||||| | || |||| || || Sbjct 560 ATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTGCGTGGTGG 514 >seq104930 Length=294 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || ||||||||||| || || ||||||||||| || || Sbjct 283 AAGATCCAGGACAAGGAAGGTATCCCTCCCGATCAGCAGCGCTTGATCTTTGCTGGTAAG 224 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| ||||| | | | | || || || ||||| || |||||||| || || ||| Sbjct 223 CAGCTTGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAATCCACCCTCCAC 164 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||| ||||||| || Sbjct 163 TTGGTCCTGCGTCTGCGCGGTGG 141 >seq41981 Length=230 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| || ||| | || || | ||||| || || || || | || || || || | Sbjct 35 GATGCAAATTTTTGTGAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCCTC 94 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||||||||| || |||||||| || Sbjct 95 CGACACTATTGAGAATGTTAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCCGACCA 154 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | || |||||||| || |||||||| ||| | | | |||| || || || Sbjct 155 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 214 Query 24883 CATTCAAAAGGAATC 24897 ||| || |||||||| Sbjct 215 CATCCAGAAGGAATC 229 >seq168520 Length=216 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || || || || || || || | | Sbjct 196 ATGCAGATCTTCGTAAAAACCCTCACGGGGAAGACCATCACACTTGAGGTCGAGCCTTCA 137 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| |||||||| ||||| ||||| || || || ||||| Sbjct 136 GACACGATCGAAAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGATCAG 77 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || || ||||| || ||||| |||||| | | | || ||||| ||| Sbjct 76 CAGCGCCTTATTTTCGCCGGCAAGCAGCTAGAGGATGGACGCACTCTCTCCGATTACAAC 17 Query 24884 ATTCA-AAAGG 24893 ||||| ||||| Sbjct 16 ATTCAGAAAGG 6 >seq75430 Length=261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || || || || | || || || || | Sbjct 6 ATGCAGATCTTCGTTAAGACCCTTACTGGAAAGACCATCACTTTGGAGGTTGAGCCCTCA 65 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || ||||| || || || || Sbjct 66 GATACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAG 125 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || ||||| || || ||||| |||||| | | | |||| ||||| ||| Sbjct 126 CAGCGTCTTATTTTTGCAGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCTGATTACAAC 185 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || || || | || | || ||||||| ||| Sbjct 186 ATCCAGAAAGAGTCAACCCTCCATCTTGTTCTCCGTCTGCGCGGTGGC 233 >seq381734 Length=9470 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | ||||| || || || || || || || || || || | ||||| | Sbjct 232 ATGCAGATCTTCGTGAAAACACTGACTGGCAAGACCATCACCCTTGAGGT-GGAGCCATC 174 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || || || |||||||| ||||| || ||||| || || Sbjct 173 TGACACAATCGAGAATGTCAAGGCGAAAATTCAAGACAAGGAAGGTATTCCTCCTGACCA 114 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || || || |||||||| ||| | | | |||| || || || Sbjct 113 GCAGAGATTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 54 Query 24883 CATTCAAAAGG 24893 || || |||| Sbjct 53 TATCCAGAAGG 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447750098162200